Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00672 ATGGGAAGGCCACCTTGCTGCGACAAAATTGGGATCAAGAAGGGACCTTGGACTCCCGAAGAAGACATCGTCTTGGTCTCTTATATTCAAGAACACGGACCTGGAAATTGGAGATCTGTTCCCACCAAGACAGGTCTGATGAGATGCAGTAAGAGTTGCAGGCTTAGATGGACTAACTATCTTCGTCCTGGTATCAAAAGAGGCAACTTCACCGACCATGAGGAGAAGATGATCGTCCACCTCCAAGCTCTGCTCGGCAACAGGTGGGCTGCTATAGCTTCGTATCTTCCACAGAGGACGGACAACGACATAAAGAATTATTGGAACACCCATTTGAAGAAGAAGCTCAAGAGGATTCAAACTGGGACTGAGGGTGGTGACGACCAAGAAGACGACTCGTTGTCACAGACCAAGGGCCAGTGGGAGAGAAAGCTTCAAACAGATATCCACATGGCCAAACAGGCTCTGTGTCATGCTCTGTCCCTCGACCAGCCCACCGAAACCAAAATCGAAACCAAGCCATCCAATCCCACAATCCAAACATCCCCTTACGCTTCAAGCACTGAGAACATAGCCCGATTACTTCAGAACTGGATGAAAAAATCCCCAAATCACCCAACATCAGGAGCTCACTTCATCAACATGGGTACGACAGGTTCCAGTTCGTCCAGCGAAACGACGACGTATAATAGCAACAGTAACAACCATGTTCTAGATTCTCTGTGGAGCTTTAACTCTGATACTTCTCAACAATCTGTGTCTGTGGACGACAACACCAACAGCAACATGTTCCAGGACGAGAGCAAGCCGAGCTCTGATTCGCATCAGCTTCCTCTGACCCTAATCGAGAAGTGGCTCTTTGATGATGGGTTAGCTCAGAACCAGGATGATGACCTAATCAACGACTCAGTACTTCTGGAACAAACTACTCCACAAATGTTCTAG 945 0.4783 MGRPPCCDKIGIKKGPWTPEEDIVLVSYIQEHGPGNWRSVPTKTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKRIQTGTEGGDDQEDDSLSQTKGQWERKLQTDIHMAKQALCHALSLDQPTETKIETKPSNPTIQTSPYASSTENIARLLQNWMKKSPNHPTSGAHFINMGTTGSSSSSETTTYNSNSNNHVLDSLWSFNSDTSQQSVSVDDNTNSNMFQDESKPSSDSHQLPLTLIEKWLFDDGLAQNQDDDLINDSVLLEQTTPQMF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00672 314 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Accr12g00672 314 Gene3D - 68 153 - -
Accr12g00672 314 MobiDBLite consensus disorder prediction 119 141 - -
Accr12g00672 314 CDD SANT 69 112 IPR001005 -
Accr12g00672 314 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Accr12g00672 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 242 - -
Accr12g00672 314 MobiDBLite consensus disorder prediction 200 232 - -
Accr12g00672 314 CDD SANT 16 61 IPR001005 -
Accr12g00672 314 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Accr12g00672 314 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Accr12g00672 314 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr12g00672 314 MobiDBLite consensus disorder prediction 249 275 - -
Accr12g00672 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Accr12g00672 314 FunFam MYB-related transcription factor 13 66 - -
Accr12g00672 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Accr12g00672 314 SMART sant 13 63 IPR001005 -
Accr12g00672 314 SMART sant 66 114 IPR001005 -
Accr12g00672 314 Gene3D - 13 66 - -
Accr12g00672 314 MobiDBLite consensus disorder prediction 167 186 - -
Accr12g00672 314 FunFam Transcription factor MYB30 68 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00672 Accr-Chr12 6331897 6333017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00672 1 289 MYB Transcription Factor Family AT5G62470 51.744 2.69e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr12g00672 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00672 K09422 - gmx:100807020 403.675