Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00671 ATGTATGTGATGGGAAGGCCACCTTGCTGCGACAAAATTGGGATCAAGAAGGGACCTTGGACTCCCGAAGAAGACATCGTCTTGGTCTCTTATATTCAAGAACACGGACCTGGAAATTGGAGATCTGTTCCCACCAAGACAGGTCTGATGAGATGCAGTAAGAGTTGCAGGCTTAGATGGACTAACTATCTTCGTCCTGGTATCAAAAGAGGCAACTTCACCGACCATGAGGAGAAGATGATCGTCCACCTCCAAGCTCTGCTCGGCAACAGGTGGGCTGCTATAGCTTCGTATCTTCCACAGAGGACGGACAACGACATAAAGAATTATTGGAACACCCATTTGAAGAAGAAGCTCAAGAGGATTCAAACTGGGACTGAGGGTGGTGACGACCAAGAAGACGACTCGTTGTCACAGACCAAGGGCCAGTGGGAGAGAAAGCTTCAAACAGATATCCACATGGCCAAACAGGCTCTGTGTCATGCTCTGTCCCTCGACCAGCCCACCGAAACCAAAATCGAAACCAAGCCATCCAATCCCACAATCCAAACATCCCCTTACGCTTCAAGCACTGAGAACATAGCCCGATTACTTCAGAACTGGATGAAAAAATCCCCAAATCACCCAACATCAGGAGCTCACTTCATCAACATGGGTACGACAGGTTCCAGTTCGTCCAGCGAAACGACGACGTATAATAGCAACAGTAACAACCATGTTCTAGATTCTCTGTGGAGCTTTAACTCTGATACTTCTCAACAATCTGTGTCTGTGGACGACAACACCAACAGCAACATGTTCCAGGACGAGAGCAAGCCGAGCTCTGATTCGCATCAGCTTCCTCTGACCCTAATCGAGAAGTGGCTCTTTGATGATGGGTTAGCTCAGAACCAGGATGATGACCTAATCAACGACTCAGTACTTCTGGAACAAACTACTCCACAAATGTTCTAG 954 0.4769 MYVMGRPPCCDKIGIKKGPWTPEEDIVLVSYIQEHGPGNWRSVPTKTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKRIQTGTEGGDDQEDDSLSQTKGQWERKLQTDIHMAKQALCHALSLDQPTETKIETKPSNPTIQTSPYASSTENIARLLQNWMKKSPNHPTSGAHFINMGTTGSSSSSETTTYNSNSNNHVLDSLWSFNSDTSQQSVSVDDNTNSNMFQDESKPSSDSHQLPLTLIEKWLFDDGLAQNQDDDLINDSVLLEQTTPQMF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00671 317 Gene3D - 16 69 - -
Accr12g00671 317 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Accr12g00671 317 MobiDBLite consensus disorder prediction 170 189 - -
Accr12g00671 317 FunFam Transcription factor MYB30 71 129 - -
Accr12g00671 317 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Accr12g00671 317 SMART sant 16 66 IPR001005 -
Accr12g00671 317 SMART sant 69 117 IPR001005 -
Accr12g00671 317 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Accr12g00671 317 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Accr12g00671 317 MobiDBLite consensus disorder prediction 122 144 - -
Accr12g00671 317 CDD SANT 72 115 IPR001005 -
Accr12g00671 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 245 - -
Accr12g00671 317 MobiDBLite consensus disorder prediction 203 235 - -
Accr12g00671 317 Gene3D - 71 157 - -
Accr12g00671 317 CDD SANT 19 64 IPR001005 -
Accr12g00671 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Accr12g00671 317 MobiDBLite consensus disorder prediction 252 278 - -
Accr12g00671 317 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Accr12g00671 317 FunFam MYB-related transcription factor 16 69 - -
Accr12g00671 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00671 Accr-Chr12 6331888 6333017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00671 4 292 MYB Transcription Factor Family AT5G62470 51.744 2.47e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr12g00671 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00671 K09422 - gmx:100807020 403.675