Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00660 ATGTCTGGCCAAAAAAGTTGCAGAGCTTCAAACTTGAACGAGAATGAGATCAATGATCTTGTGTGGAGGTTACAAGCACTTCTGCCTCGCCTGAACCGAAGGACTGACTCAAGGGTATCAGTGTCGAAGATATTGAAAGAAACATGCAGTCACATCAAGAAGCTACAGAAAGAGGTGGAAGAGCTGAGTGAAAGGGTAATAGAGCTGATGGAATCTGCTGACATTACGGAAATAGACGAGGAGAGTCTTAGAAGATTGTTGTTACATTGA 270 0.4296 MSGQKSCRASNLNENEINDLVWRLQALLPRLNRRTDSRVSVSKILKETCSHIKKLQKEVEELSERVIELMESADITEIDEESLRRLLLH 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00660 89 Gene3D - 14 86 IPR036638 GO:0046983
Accr12g00660 89 Coils Coil 45 72 - -
Accr12g00660 89 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
Accr12g00660 89 PANTHER DNA BINDING PROTEIN 4 87 IPR044172 -
Accr12g00660 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 72 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00660 Accr-Chr12 6214821 6215399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00660 1 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 49.367 1.90e-17 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr12g00660 HLH 5.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00660 - - gmx:100790746 105.916