Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00658 ATGGGAAATTGCTTGGGTTCTCGTCCCGGGTTTGATTACAGTCGAACCTCCCATCAAACTTACGATGCTTCAGAAGTTGCTGGTAGAAGCACCCCTTCCTGTCTAAGTCAATCAGTTTTTGAATACAAGAACAAAGATAAATCTCAGACTCTCTGGGCCCCAAGATCTGAAGGTGATATACTTTCCTCGCCAAATTTGAAGGCCTTCACATTTAATGAACTTAGGAATGCTACTAGGAACTTTGGTCCTGATAGTCTAATAGGACAAGGAGGCTTTGGTGATGTCCACAAGGGGTGGATTGATGAGCAATCCCTTAGTGCTACTAAGCCCGGATCTGGAATGGTTGTGGCCGTGAAGAAGTTGAAACCTGAAGGTTTTCAGGGGCATAAGGAGTGGCTGTCTGAAGTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTATTGGATACTGCCTACATGGAGATAATCGACTTCTAGTATATGAGTACTTGCCCAAAGGCAGCTTGGAGAACCATCTATTTCGCAGGGTCTCACAGTCACTTTCATGGGCAACAAGGATCAAAGTTGCCATTGATGCTGCTCGTGGTCTTGCCTTCCTACACAACTCCGATCCACAAGTTATCTACCGTGATTTTAAGGCTTCCAATGTATTATTGGATTCGGAATTTAACGCAAAACTCTCAGACTTTGGTTTGGCTAAAGCAGGACCAACTGGTGATCGTTCTCATGTTTCAACTCAAGTCATGGGTACTCACGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGCTAACAACAAAGTGCGATGTCTATAGCTTTGGGGTTGTGCTTTTGGAGCTGCTATCAGGGCGTTGTGTCATCGACAAAACAAAATCTAGAGTGGAACAAAATCTGTTAGAATGGGCAAAAGCGTCCTTTTTGGGCGATAGGAGAAAGCTATTCAGGATTATGGATACCAAGTTAGAAGGCCAGTACCCACAGAGGGCTGCTTATGCAGCTGCAATCCTTGCATTACAGTGCACTAGTGAGGCCAAAATCAGGCCCCAGATGTCTGAGGTCGTGGCTACGTTAGAACGGCTTCTGGACAGCAGATCATCTGGCCGGAGCCGGATGTCTGTCCCTTCTTCTACAGGGAACCATTGTTTAACAGAGAGCAAGTCTGTATCTAGTCTGTGA 1188 0.4537 MGNCLGSRPGFDYSRTSHQTYDASEVAGRSTPSCLSQSVFEYKNKDKSQTLWAPRSEGDILSSPNLKAFTFNELRNATRNFGPDSLIGQGGFGDVHKGWIDEQSLSATKPGSGMVVAVKKLKPEGFQGHKEWLSEVNYLGQLHHPNLVKLIGYCLHGDNRLLVYEYLPKGSLENHLFRRVSQSLSWATRIKVAIDAARGLAFLHNSDPQVIYRDFKASNVLLDSEFNAKLSDFGLAKAGPTGDRSHVSTQVMGTHGYAAPEYIATGRLTTKCDVYSFGVVLLELLSGRCVIDKTKSRVEQNLLEWAKASFLGDRRKLFRIMDTKLEGQYPQRAAYAAAILALQCTSEAKIRPQMSEVVATLERLLDSRSSGRSRMSVPSSTGNHCLTESKSVSSL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00658 395 FunFam Serine/threonine-protein kinase BIK1 48 166 - -
Accr12g00658 395 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 167 375 - -
Accr12g00658 395 Gene3D Phosphorylase Kinase; domain 1 53 166 - -
Accr12g00658 395 SUPERFAMILY Protein kinase-like (PK-like) 56 361 IPR011009 -
Accr12g00658 395 Gene3D Transferase(Phosphotransferase) domain 1 167 380 - -
Accr12g00658 395 ProSiteProfiles Protein kinase domain profile. 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00658 395 MobiDBLite consensus disorder prediction 370 395 - -
Accr12g00658 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Accr12g00658 395 PANTHER OS01G0588500 PROTEIN-RELATED 46 364 - -
Accr12g00658 395 ProSitePatterns Protein kinases ATP-binding region signature. 87 120 IPR017441 GO:0005524
Accr12g00658 395 Pfam Protein tyrosine and serine/threonine kinase 86 292 IPR001245 GO:0004672|GO:0006468
Accr12g00658 395 MobiDBLite consensus disorder prediction 369 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00658 Accr-Chr12 6169867 6172967 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00658 67 361 Glycoside Hydrolase AT3G07070 53.846 3.08e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr12g00658 PK_Tyr_Ser-Thr 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00658 - - qsa:O6P43_022821 550.436