Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00657 ATGGGAAATTGCTTGGGTTCTCGTCCCGGGTTTGATTACAGTCGAACCTCCCATCAAACTTACGAAGTTGCTGGTAGAAGCACCCCTTCCTGTCTAAGTCAATCAGTTTTTGAATACAAGAACAAAGATAAATCTCAGACTCTCTGGGCCCCAAGATCTGAAGGTGATATACTTTCCTCGCCAAATTTGAAGGCCTTCACATTTAATGAACTTAGGAATGCTACTAGGAACTTTGGTCCTGATAGTCTAATAGGACAAGGAGGCTTTGGTGATGTCCACAAGGGGTGGATTGATGAGCAATCCCTTAGTGCTACTAAGCCCGGATCTGGAATGGTTGTGGCCGTGAAGAAGTTGAAACCTGAAGGTTTTCAGGGGCATAAGGAGTGGCTGTCTGAAGTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTATTGGATACTGCCTACATGGAGATAATCGACTTCTAGTATATGAGTACTTGCCCAAAGGCAGCTTGGAGAACCATCTATTTCGCAGGGTCTCACAGTCACTTTCATGGGCAACAAGGATCAAAGTTGCCATTGATGCTGCTCGTGGTCTTGCCTTCCTACACAACTCCGATCCACAAGTTATCTACCGTGATTTTAAGGCTTCCAATGTATTATTGGATTCGGAATTTAACGCAAAACTCTCAGACTTTGGTTTGGCTAAAGCAGGACCAACTGGTGATCGTTCTCATGTTTCAACTCAAGTCATGGGTACTCACGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGCTAACAACAAAGTGCGATGTCTATAGCTTTGGGGTTGTGCTTTTGGAGCTGCTATCAGGGCGTTGTGTCATCGACAAAACAAAATCTAGAGTGGAACAAAATCTGTTAGAATGGGCAAAAGCGTCCTTTTTGGGCGATAGGAGAAAGCTATTCAGGATTATGGATACCAAGTTAGAAGGCCAGTACCCACAGAGGGCTGCTTATGCAGCTGCAATCCTTGCATTACAGTGCACTAGTGAGGCCAAAATCAGGCCCCAGATGTCTGAGGTCGTGGCTACGTTAGAACGGCTTCTGGACAGCAGATCATCTGGCCGGAGCCGGATGTCTGTCCCTTCTTCTACAGGGAACCATTGTTTAACAGAGAGCAAGTCTGTATCTAGTCTGTGA 1179 0.4538 MGNCLGSRPGFDYSRTSHQTYEVAGRSTPSCLSQSVFEYKNKDKSQTLWAPRSEGDILSSPNLKAFTFNELRNATRNFGPDSLIGQGGFGDVHKGWIDEQSLSATKPGSGMVVAVKKLKPEGFQGHKEWLSEVNYLGQLHHPNLVKLIGYCLHGDNRLLVYEYLPKGSLENHLFRRVSQSLSWATRIKVAIDAARGLAFLHNSDPQVIYRDFKASNVLLDSEFNAKLSDFGLAKAGPTGDRSHVSTQVMGTHGYAAPEYIATGRLTTKCDVYSFGVVLLELLSGRCVIDKTKSRVEQNLLEWAKASFLGDRRKLFRIMDTKLEGQYPQRAAYAAAILALQCTSEAKIRPQMSEVVATLERLLDSRSSGRSRMSVPSSTGNHCLTESKSVSSL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00657 392 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 164 372 - -
Accr12g00657 392 Gene3D Phosphorylase Kinase; domain 1 50 163 - -
Accr12g00657 392 PANTHER OS01G0588500 PROTEIN-RELATED 45 361 - -
Accr12g00657 392 SUPERFAMILY Protein kinase-like (PK-like) 53 358 IPR011009 -
Accr12g00657 392 ProSiteProfiles Protein kinase domain profile. 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00657 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Accr12g00657 392 Pfam Protein tyrosine and serine/threonine kinase 83 289 IPR001245 GO:0004672|GO:0006468
Accr12g00657 392 Gene3D Transferase(Phosphotransferase) domain 1 164 377 - -
Accr12g00657 392 MobiDBLite consensus disorder prediction 367 392 - -
Accr12g00657 392 ProSitePatterns Protein kinases ATP-binding region signature. 84 117 IPR017441 GO:0005524
Accr12g00657 392 FunFam Serine/threonine-protein kinase BIK1 45 163 - -
Accr12g00657 392 MobiDBLite consensus disorder prediction 366 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00657 Accr-Chr12 6169867 6172967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00657 64 358 Glycoside Hydrolase AT3G07070 53.846 2.52e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr12g00657 PK_Tyr_Ser-Thr 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00657 - - qsa:O6P43_022821 546.969