Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00627 ATGGGGAATAAAAAGAGAAACCCTGCCCCACGTTCCAAACAACCTGCGGCGGCTTCTCCGGTGACACAACCTGCCATCGGCGGAGCCGCCAATGGCCCTACTTCAGCCGAATCGGAGTTGTGCATGAGTCCCAATCACACTATTCAAAACACGACTAAGATCGAGCTGCCTCCTCAATATGAGCCTTCAGCATACTCCGAAATCAAGCTTGAATGTGAAAAAGCACTCAACGCGCTCAGGCGTGGTAACCACACCAAGGCACTGAGGCTTATGAAGGAGTCATGTTCCAGACACGAAAGCTCGGCTTCCTCTGCCTTGATTCACCGAGTTCAAGGTACAGTATGTGTCAAAGTGGCCTCAATTATTGATGACCCGAATGCAAAGCAAAGACATTTGAAGAATGCAATCGAGTCTGCCCGAAAAGCCGTTGAGCTATCGCCCAGTTCTGTTGAGTTCGCACATTTTTTTGCAAATTTGTTATACGAGGCAGCAAATGATTCGGCTGAATATGAACAGGTGGTGAAGGAGTGTGAAAGGGCACTCGACATTCCAAATCCAATTGATCCAGCGAAGGAGAGCTTGCAGGGTGAGAGCCAGCAGAAAATATCAACTGCAGAGGCTCGGATAGCACATGTCCAGCATGAGTTGCGGCAGCTAATTCAGAAGTCAAACATAGCTTCTTTATCAACGTGGGTGAAAAATCTGGGTAACGGGGAGGAGAAATTCCGTTTGATTCCAATAAGGAGGGCTACAGAGGATCCAATGGAGGTGAGGTTGGTTCAAACTAGAAGGCCAAATGAGATAAAAAAGGTGACCAAGACACCTGAGGAAAGAAGAAAAGAAATTGAAGTTCGAGTGGCTGCTGCAAGGCTACTGCAGCAAAAGCCAGAGTCACCCCAATCCCAGAACGAAGTGGACAGGGAAGACAAGACATTGGGTTCATCTTCAGGATCTGGGCAGAGGATAAATGAGAGGCGGAAGTATAGCCATGTCCGAAAAGCTGGCTCCACATCTGAAAGGAGAGATTGGGTTCGTATATATTGGAATTCGTTGAGTATTGATTTGAAGAAGGAGTTTCTTAGGATTAGGGTATCTGATCTAAAATCTCACGCTGGGTCTTCAAAGGATACTTTGCTAAGTGACATAGTATCAGAAGCCTTGTCGCATGCTGAGGCTAACAAAACATGGAAATTCTGGCTTTGCTGCCACTGTAGTGAGAAGTTTTCAGATTCAGAATCTCATATGCAGCATGTTGTGCAGGAACATATGGGGAATCTATTACCTAAAATGCAGAGACTTTTGCCTCAAAATGTTGACAATGAATGGATTGAGAAGATTCTTGACTGTTCTTGGAAACCTCTGGACGCCTCTGCAGCTGTCAAAATGCTTGAAGCAAAACCCAAAGATTTTTCATTTCCTGAGGATTCTTATATGGATCATACTGAGCAGCACAATTATTGCTTTGAAGACACTAATAATTCTCTACTTGAAAAGGGGCATAACCTTGATACCCATACACCAGATAGAAGTAACTATTGTAAATCTGAGGAAATCAATATTACAGAAGGTGTTGGAGTTGAACAGTCTATAGCATATTCCCTTGTTGATGGTTGGCCATTGTCAGATGACTCTGAGCGGGCAAAGCTTCTTGAGAAAATTCATGCAGTATTAGATATGCTTATTAGACACAAATATCTTGCTGCTAGTCATCTCAGCAAGGTCATACAATTTTCCATGGATGAGATACAAGGACTTGCTGTTGGGTCTCATCTTTTGAATCATGGTTTAGACCAATCACCAACATGCATATGCTTTTTGGGAGTGCCTGAACTTCAGAAAATTCTCAAATTTTTGCAGGAATTGTCTCATTCTTGTGGTCTGGGTAGATATGCTGATAAAAGTACTAGTCCCACAGATGATTCACACAATTCAAATCAAATTCCTGAGATTAAAGAGAAGATTATTCTGAATGGAGATGCATCATGCCTTCTTCTAGATGAATGTTTAGTGCCTGTAGAAATCACTCCTGGTGCAACCAAGAGTTCTGCATTGGATGATGTGATTTCCCCATCTTCTGATGATGTAGTTTTACACATTGCCGATCCTTTCATATCCTGGATGTTTTCAGGTTTATCTTGTGGGGATCAATTGAACTTGTGGATGAGAACAAAAGAAGATAAAAGACATCAAGGAATGGAACTCGTCCAAACTCTTGAGAAGGAGTTTTATCACCTGCAGAGTCTTTCTGAGAAGAAATATGAGCGATTGAACTATGAGGAAGCATTGCAGTTAGTAGAGGACCTTTGTTTAGAAGAAGGTAAGAAGAGGGAAAATTTTACTGAATTTGTTCAGCGAAGCTATGGATCTGTTTTGAGAAAGCGGAAAGAAGAGCTCATTGAGAGTGAGAATGATGTCATGTATGTTAGCAATAGATTTGAGTTGGATGCCATAGCAAATGTTTTGCAAGAAGCAAAGGCTATGGATGTCAATCAGTTTTGTTATGAGGAAAATTATACTGGTGCATGTGACTTAGAATCTGGTGAGGATGATGAATGGAGAATGAAAGACTATTTGCATCAAATGGATAGCTACATAGAAATAGCCATTCAGAAACTGAAGGAAAACCTATCTGTGGAGCTTAGCAAAATTGATGCGCGGATCATGAGAAATGTTTCAGAGATGCAGCAGTTGGAACTGAAGCTTGAGCCTGTTTCTGCTTTTGATTATCGTACAATATTACTGCCTCTAGTGAAGTCGTACCTAAGGGCACGTTTGGAAGATTTGGCTGAGAAAGATGCAACGGAGAAGTCTGATGCAGCAAGGGAAGCATTTTTGGCCGAGCTTGCTCTTGATTCAAAGAAGGGTGTTAAAGGGGGAAATGATAGTGCAAAACATACGGAGAAGACAAAAGATAAGAAGAAAAATAAAGAGAACAAAAAAACAAGGGATTTAAAGGCCGCATATGGTCATGAGCAGCACATTCATGACACCACTACTCCTGATTCCTATTCTGCCGCGGTTGATAATGACCATGATTCCATTCTTGTTTCTACGATTAGTGATGAGTTGGAACAGCTGGAAGAGGAGGTTAGACGTAAAATTGAGTTAGAAGAGGAGGAGAAAAAACTTGAAGAAACTTTGGAGTTACAACGACGAATAGAAAATGAGGCTAAACTGAAACACCTCGCTGAGCAACAAAAAAGGTCGTTTGGGACACATTTGGTGAAGCCTGATGACAAAGTTCTGGAGCATCGGGTAAAGACTTTTGCTGATGGTCCAGAAGTACATGAACATATGAGACAGCCTATGCTGGAGCAGTTAGCAAATGTGAATGGTTACCCAAGCAATTTAGATGGTGTGCTTATTGCCACGCCAAATGGTTCTGCAGCACCAGACTCATCTTTACTCAATTCAGTTAATCAATCGATTCATCATCTGCATCCATCAAATATGAAGCAAGCAGATCTGTCTAACAAAGTAGTTCCTGAGAATGGTTTTCAGTTGGCAGAGCAGCGTACAGTAAAAAAAGGTAAACGGCATAAAAATGCTTCCAGATTGGTTGATGGAAAGTTTGAGGCTGGCTCATTGGATAAACAAAACGTTGGTGTATATACTGATAATCATTCAACAGAGCACGTTAAATTCCACAACAATCAAGATGCTAACAACGGGCAAGGAGACAATGGATTAATGGCTATAGAAGAGTTGCAAGGGGATCATGATGAGGAGGAAAGGTTCCAAGCTGACTTAAAAAAAGCTGTTCGCCAAAGTCTGGACACATATCAAGCTCTTCAAAAATTGCCTCCAGTTTCTAGATTGAGAACGCCTGATAGAGCTTCTTTGCAAGTGGATAATTTTGGTGCTCCAATGGAGGAAAACACAACTGAGAATGTCGATGGAGGTACTTTGCTCGGTACTGGGCTGAAGAATGAAGTGGGTGAATATAATTGCTTTCTCAACGTTATAATACAATCTTTGTGGCATTTACGACGTTTCCGCGAGGAATTTCTTAGTAGAGCGAGATCAGAGCATGACCATGTGGGCAATCCTTGCGTTGTCTGTGCATTATATGAAATCTTTACTGCCATGGAAATTGCGTCAAAGGATTGCAGGGGAGAAGCTGTAGCCCCTACTTCTCTGAGAATTGCTCTTAGCAACCTATGTCCAGATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAAGTACTGGTAGTGATATTTGACTGCCTTCATCGATCATTTACTCGTGCTCCAAGTGTTCCTGATGCAGAATCAGTGAAAAGCAATTCCCTGCGATCTTGGGATTGTGTAAACAGTAGTTGTATAGCACATTCACTTTTTGGAATGGACATTTTTGAACGGATGAACTGCCACCACTGTGGTCTTGAGTCCAGACATCTTAAGTACACTTCCTTCTTCCACCATATAAATGCCAACTCCCTTCGGACCATGAAGGTAATGTGTAGTGAAAGCTCCTTTGATGAGATTTTGAATCAAGTGGAGATGAACCATCAGTTAGCTTGTGATCCAGAAGATGGCGGCTGTGGCAAGCTAAATTACATCCATCACTTTCTTTCAAAACCACCTCACGTCTTCACAACTGTTCTAGGCTGGCAAAACACATGCGAGAGTGCTGATGATATTAAAGCAACTTTGGCAATATTGAGCACCGAGATGGATGTCAGTGTTCTTTATCGTGGGTTAGATCCAAAAAACATCCATAGCTTGGTCTCAGTGGTATGCTACTATGGGCAACATTATCATTGCTTCGCTTATAGCCATGAACATGAACAATGGATTATGTATGATGATAAGACAGTCAAGATAATTGGTGGGTGGCCTGATGTTCTTTCAATGTGTGAAAGAGGGCATCTACAGCCTCAAGTTCTTTTCTTTGAAGCCGTGAACTAA 4920 0.4201 MGNKKRNPAPRSKQPAAASPVTQPAIGGAANGPTSAESELCMSPNHTIQNTTKIELPPQYEPSAYSEIKLECEKALNALRRGNHTKALRLMKESCSRHESSASSALIHRVQGTVCVKVASIIDDPNAKQRHLKNAIESARKAVELSPSSVEFAHFFANLLYEAANDSAEYEQVVKECERALDIPNPIDPAKESLQGESQQKISTAEARIAHVQHELRQLIQKSNIASLSTWVKNLGNGEEKFRLIPIRRATEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKPESPQSQNEVDREDKTLGSSSGSGQRINERRKYSHVRKAGSTSERRDWVRIYWNSLSIDLKKEFLRIRVSDLKSHAGSSKDTLLSDIVSEALSHAEANKTWKFWLCCHCSEKFSDSESHMQHVVQEHMGNLLPKMQRLLPQNVDNEWIEKILDCSWKPLDASAAVKMLEAKPKDFSFPEDSYMDHTEQHNYCFEDTNNSLLEKGHNLDTHTPDRSNYCKSEEINITEGVGVEQSIAYSLVDGWPLSDDSERAKLLEKIHAVLDMLIRHKYLAASHLSKVIQFSMDEIQGLAVGSHLLNHGLDQSPTCICFLGVPELQKILKFLQELSHSCGLGRYADKSTSPTDDSHNSNQIPEIKEKIILNGDASCLLLDECLVPVEITPGATKSSALDDVISPSSDDVVLHIADPFISWMFSGLSCGDQLNLWMRTKEDKRHQGMELVQTLEKEFYHLQSLSEKKYERLNYEEALQLVEDLCLEEGKKRENFTEFVQRSYGSVLRKRKEELIESENDVMYVSNRFELDAIANVLQEAKAMDVNQFCYEENYTGACDLESGEDDEWRMKDYLHQMDSYIEIAIQKLKENLSVELSKIDARIMRNVSEMQQLELKLEPVSAFDYRTILLPLVKSYLRARLEDLAEKDATEKSDAAREAFLAELALDSKKGVKGGNDSAKHTEKTKDKKKNKENKKTRDLKAAYGHEQHIHDTTTPDSYSAAVDNDHDSILVSTISDELEQLEEEVRRKIELEEEEKKLEETLELQRRIENEAKLKHLAEQQKRSFGTHLVKPDDKVLEHRVKTFADGPEVHEHMRQPMLEQLANVNGYPSNLDGVLIATPNGSAAPDSSLLNSVNQSIHHLHPSNMKQADLSNKVVPENGFQLAEQRTVKKGKRHKNASRLVDGKFEAGSLDKQNVGVYTDNHSTEHVKFHNNQDANNGQGDNGLMAIEELQGDHDEEERFQADLKKAVRQSLDTYQALQKLPPVSRLRTPDRASLQVDNFGAPMEENTTENVDGGTLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLSRARSEHDHVGNPCVVCALYEIFTAMEIASKDCRGEAVAPTSLRIALSNLCPDSNFFQEAQMNDASEVLVVIFDCLHRSFTRAPSVPDAESVKSNSLRSWDCVNSSCIAHSLFGMDIFERMNCHHCGLESRHLKYTSFFHHINANSLRTMKVMCSESSFDEILNQVEMNHQLACDPEDGGCGKLNYIHHFLSKPPHVFTTVLGWQNTCESADDIKATLAILSTEMDVSVLYRGLDPKNIHSLVSVVCYYGQHYHCFAYSHEHEQWIMYDDKTVKIIGGWPDVLSMCERGHLQPQVLFFEAVN 1639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00627 1639 SUPERFAMILY Cysteine proteinases 1306 1636 IPR038765 -
Accr12g00627 1639 Gene3D Tetratricopeptide repeat domain 54 221 IPR011990 GO:0005515
Accr12g00627 1639 MobiDBLite consensus disorder prediction 957 997 - -
Accr12g00627 1639 Coils Coil 202 222 - -
Accr12g00627 1639 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1638 - -
Accr12g00627 1639 MobiDBLite consensus disorder prediction 955 1002 - -
Accr12g00627 1639 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1306 1638 IPR028889 -
Accr12g00627 1639 Pfam Protein of unknown function (DUF627) 75 184 IPR006866 -
Accr12g00627 1639 CDD Peptidase_C19 1397 1636 - -
Accr12g00627 1639 Coils Coil 1016 1056 - -
Accr12g00627 1639 MobiDBLite consensus disorder prediction 291 334 - -
Accr12g00627 1639 Gene3D Cysteine proteinases 1289 1637 - -
Accr12g00627 1639 ProSitePatterns Zinc finger C2H2 type domain signature. 401 422 IPR013087 -
Accr12g00627 1639 Pfam Ubiquitin carboxyl-terminal hydrolase 1307 1614 IPR001394 GO:0004843|GO:0016579
Accr12g00627 1639 Pfam Protein of unknown function (DUF629) 344 866 IPR006865 -
Accr12g00627 1639 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00627 Accr-Chr12 5834858 5842611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00627 68 1636 C2H2 Transcription Factor Family AT3G47890 56.587 0.0 1689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00627 - - adu:107493676 2149.78