Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00624 ATGTCTCGAAGTTGTCGTGTGAACTGTTATAATTGGTTAATAGTTATCTTCCCTGCATTGGATGTACATGTAAAAAATGTAATTTGTACTTATTCCCTTGAACATGATGGCATCGATGACGCCTTCAACTCAATCTTTCAATATTTAGATGAGTTGATGGATCCAAATGTGAATATTTCCAAACCGTCTCAAGAACTTATATGCTGCATTGGAATCTTGCAAGCCACCACATTCCAGCATATGCAGAAAGAAGAAGAGCAGGTTTTTCCTCTCTTGCTGCAGAAAGTTTCTATCGAGGAACAGGCTTCGCTGGTCTGGCAATTCATATGCAGTGTTCCCATAATGTTGCTGCAGGAAATTTTGCCATGGATGGTATCATTCCTTTCTGCAGACAAACAAGCAGAAGTTCAGAAGTTCTTAAATGAAATTACACCAATGGAGAAAGAACTGCAAGAGGTTTTGATTGCTTGGCTTGGCAGCAACAGCCAAATCTTCACCGAGGACCGCTCACTGAATGAAGTTGTTCAATGTGCCGATGGATTCCTGCATAAGAAAAGACCACGTGGGTTGAGTTATTGCAATAACAATTTTAAAGCCATTTCAAATAAGATGAAAGAAAATTGCTCAGACGTAGAAGATAGAGCCAATCAAGTCAATGTTCTTTATCTTTGGCATAATGCCATCAAGAAAGATATGAAAGAGTTGCTAGAAGAACTTCATCAAATCAGAAACACCACTTGTTTTCATAATTTGGATTCGCTACTCATCCAACTAAAATTCTTCGCTGATGTTCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTCACCCAGTTTTGAGTGAACTTGCTAACGGCTGGTTGACCAAGTCAAGTGAACAATTTCTCGGAGAAAGTCATATTGAAGATTTGCAGCAGTTGCTTTTGTATGATGCTGAAAGCGGTATTCCTTTGCCAGATTTCGTGGAGAAGCTTTGCAGAGAGCTTGAACTATTTATGACAAGAATCAACAAAAAATTTGCTTTTCAAGAAACTGAGGTATTTCCTGCCATTCGCTTGAATCGCAACAATGGAATGCTAGAGGAACTCATTGGCTTGAGCCTGCACATGATGCCACTTGGGTTGCTGAAGTGCGTGATAACTTGGTTCTCAGCTCACTTGTCTGAAAATGAATCTAGGTCCATTCTCAGTGCCATAAAACAAGGAAATCTTTTTGTCCATGAAGCTTTTGCATCACTTGTACATGAGTGGTTCCGTGTTGGTTATTCAGGTAAAGCTTCCATTGAAAAATTCCAACAAGACTTGCGACATATTTTTAAAAGCAAAAACTCTTTGTTAACTGAGCAAGTCAAAGAAGCTCCCAGGTTTTCTTTCTTAAATTATGACAAACCTCATAAAGGATCTATCCTTAGTAATGGTTTGTCTTATACATTATCTTCTGGATTCAACAATGTGACCAAGTATGAGAAACCATGCTCTATGGGCATTAATATGCAAATATTTTCCCCCGTGACAGCTATGAAGTTAAACCGCCTTCCTAGATTTCAGGCATCTGATAGTTCTTCTTTTCCCTTTCTTGATGATTCTAAGCCTATTGACCTTATATTCTTCTTTCACAAAGCTATCAGGAATGATTTGGCTTACCTTGTTCTTGGATCAGCTGAGATAGAAAAAAATGTTGAGATGCTAGTGAATTTCAGCAGAAGATTTGATCTAATATGCTTTCTTCATCGAATCCATAGTGAGACAGAGGATGAGATAGCATTCCCAGCCTTAGAGGCAATGAGTAAAGTGAAAAACATTAGCCTCTCTTATACGATTGATCACAAATTCGAAGTTGAACACATCAAGAAAATATCCTGTATCCTTGAAAAGATGTCCGATCTACATTTTTCAGTTTCTAGCTTTGAAACAGATACATGGGAGCAGAGAATGCTAACTCATCATCAACTGTGCAAAAAGCTGCAGGAAATGTGCAAATCAATGCATAAAATTCTTTCTGACCACATGAATCGTGAAGAAATTGAAATTTGGCTTTTAATTAGAGAATTCTTCTCCAATAAGGAGCAAATGAAAATCGTAGGGTGCATGCTTGGAAGAATCAGGGCAGAAATATTACAAGATATGATACCTTGGTTAATGACATCTTTAACCCCGGAGGAACAACATGTTTTAATGTTCTTATGGTCCATGGTTGCCAAAAATACAATGTTTGATGAATGGTTGGCTGAGTGGTGGGATGGGTACAGGATAGAAAAGGAGGTAGAAAGTTCAAATGATCCTCCAATTCAGACTGTTGATCGGTTGGAGATCATATCTAAATATTTATCTAAAGAAGTTCTTGATGAACTCCAAGAAGAATCCACTTCTAACAAAAGCGAATTTTCTTCACAGAGGGATCATATTGGTGATAATAATAAGCAGTCTAACATTTGCAATCGTCCTGGCAAATCCCGAGTTTGTAAAGCAGATAAGATTAGTAGTGAATGTTCAGAATGCAGAAATCAATTGAGTGATAATAACAAACAAACATTCACTAATGTAACAGATATCGCAAGATCGATCAATGACAAGGGTCAGTCTTTTCAATCCCGTGAAAACTCTGGGCACTATGACCATGTTATGAAAATAAGTCCAGATGATCTGGAGATGGCTATAAGAAGGGTATCTCGTGACTCTTCCTTAGATCTGCAGAAGAAGTCATATATAATTCAGAATCTTCTTATGAGCCGCTGGATTGTTAAACAGCATATCTCTTGTTTAGAAGGCACTATGACAAACAATGGGCAGGAATTTCCTGGGCAGCATCCGTCTTACAGGGACTCTCTCAAATTAATCTATGGCTGCAAACACTACAGGAGAAGCTGTAAACTTTTAGCTTCCTGCTGCAACCAACTTTATACATGCATACATTGCCATAATGAGGCAACAGATCATTCAATTGACAGGAAATATATAACAAAGATGATGTGCATGAAGTGCTTGAAGATTCAGCCAATCAGTGCCACATGTTCAACTGTATCTTGCGGTAACTTACCCATGGCAAAATACTACTGCCGGATCTGTAGATTGTTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGGGTGGGAAAAGGCTTGGGCTTAGACTACTTTCATTGTATGAATTGCAATGCTTGTATGTCTCGTTCCCTCAAAGTACATATATGCAGAGAGAAATTTTTAGAGGATAACTGCCCCATCTGTCATGAATACATCTTCACGTCCTGCTCTCCAGTCAAGGCCCTCCCTTGTGGTCATGTCATGCACTCAACATGTTTTCAGGAGTATACCTACTTCAGTTATACCTGCCCAGTATGTTGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAAAATCCCGGACGAGCATTTGGGTCAAACTCAGATGATACTATGCAACGACTGTGAAAAGAAAGGAACTGCTCCCTTCCACTGGCTTTACCACAAATGCTCTTCTTGCGGGTCCTACAATACAAGAGTTATATGA 3555 0.3887 MSRSCRVNCYNWLIVIFPALDVHVKNVICTYSLEHDGIDDAFNSIFQYLDELMDPNVNISKPSQELICCIGILQATTFQHMQKEEEQVFPLLLQKVSIEEQASLVWQFICSVPIMLLQEILPWMVSFLSADKQAEVQKFLNEITPMEKELQEVLIAWLGSNSQIFTEDRSLNEVVQCADGFLHKKRPRGLSYCNNNFKAISNKMKENCSDVEDRANQVNVLYLWHNAIKKDMKELLEELHQIRNTTCFHNLDSLLIQLKFFADVLIFYSNAQKKFFHPVLSELANGWLTKSSEQFLGESHIEDLQQLLLYDAESGIPLPDFVEKLCRELELFMTRINKKFAFQETEVFPAIRLNRNNGMLEELIGLSLHMMPLGLLKCVITWFSAHLSENESRSILSAIKQGNLFVHEAFASLVHEWFRVGYSGKASIEKFQQDLRHIFKSKNSLLTEQVKEAPRFSFLNYDKPHKGSILSNGLSYTLSSGFNNVTKYEKPCSMGINMQIFSPVTAMKLNRLPRFQASDSSSFPFLDDSKPIDLIFFFHKAIRNDLAYLVLGSAEIEKNVEMLVNFSRRFDLICFLHRIHSETEDEIAFPALEAMSKVKNISLSYTIDHKFEVEHIKKISCILEKMSDLHFSVSSFETDTWEQRMLTHHQLCKKLQEMCKSMHKILSDHMNREEIEIWLLIREFFSNKEQMKIVGCMLGRIRAEILQDMIPWLMTSLTPEEQHVLMFLWSMVAKNTMFDEWLAEWWDGYRIEKEVESSNDPPIQTVDRLEIISKYLSKEVLDELQEESTSNKSEFSSQRDHIGDNNKQSNICNRPGKSRVCKADKISSECSECRNQLSDNNKQTFTNVTDIARSINDKGQSFQSRENSGHYDHVMKISPDDLEMAIRRVSRDSSLDLQKKSYIIQNLLMSRWIVKQHISCLEGTMTNNGQEFPGQHPSYRDSLKLIYGCKHYRRSCKLLASCCNQLYTCIHCHNEATDHSIDRKYITKMMCMKCLKIQPISATCSTVSCGNLPMAKYYCRICRLFDDEREIYHCPYCNLCRVGKGLGLDYFHCMNCNACMSRSLKVHICREKFLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTYFSYTCPVCCKSLGDMQVYFRMLDALLAEEKIPDEHLGQTQMILCNDCEKKGTAPFHWLYHKCSSCGSYNTRVI 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00624 1184 Gene3D nmb1532 protein domain like 529 699 - -
Accr12g00624 1184 Gene3D nmb1532 protein domain like 14 110 - -
Accr12g00624 1184 Gene3D nmb1532 protein domain like 213 364 - -
Accr12g00624 1184 Pfam Zinc-ribbon 1125 1182 IPR039512 -
Accr12g00624 1184 SMART ring_2 1078 1119 IPR001841 -
Accr12g00624 1184 MobiDBLite consensus disorder prediction 785 801 - -
Accr12g00624 1184 CDD Hr-like 533 678 - -
Accr12g00624 1184 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 576 1184 - -
Accr12g00624 1184 CDD Hr-like 15 90 - -
Accr12g00624 1184 CDD RING-H2_Pirh2-like 1077 1119 - -
Accr12g00624 1184 Pfam CHY zinc finger 949 1024 IPR008913 GO:0008270
Accr12g00624 1184 SUPERFAMILY RING/U-box 1065 1124 - -
Accr12g00624 1184 SUPERFAMILY Zinc hairpin stack 1015 1069 IPR037275 -
Accr12g00624 1184 ProSiteProfiles Zinc finger CHY-type profile. 942 1011 IPR008913 GO:0008270
Accr12g00624 1184 FunFam Zinc finger protein-related isoform 1 1073 1122 - -
Accr12g00624 1184 SUPERFAMILY CHY zinc finger-like 941 1005 IPR037274 GO:0008270
Accr12g00624 1184 Gene3D - 1149 1184 - -
Accr12g00624 1184 MobiDBLite consensus disorder prediction 785 814 - -
Accr12g00624 1184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1071 1121 IPR013083 -
Accr12g00624 1184 ProSiteProfiles Zinc finger CTCHY-type profile. 1014 1077 IPR017921 -
Accr12g00624 1184 Coils Coil 225 245 - -
Accr12g00624 1184 ProSiteProfiles Zinc finger RING-type profile. 1078 1119 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00624 Accr-Chr12 5817531 5824137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00624 15 774 C2H2 Transcription Factor Family AT3G18290 32.029 4.26e-106 361