Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr12g00624 | ATGTCTCGAAGTTGTCGTGTGAACTGTTATAATTGGTTAATAGTTATCTTCCCTGCATTGGATGTACATGTAAAAAATGTAATTTGTACTTATTCCCTTGAACATGATGGCATCGATGACGCCTTCAACTCAATCTTTCAATATTTAGATGAGTTGATGGATCCAAATGTGAATATTTCCAAACCGTCTCAAGAACTTATATGCTGCATTGGAATCTTGCAAGCCACCACATTCCAGCATATGCAGAAAGAAGAAGAGCAGGTTTTTCCTCTCTTGCTGCAGAAAGTTTCTATCGAGGAACAGGCTTCGCTGGTCTGGCAATTCATATGCAGTGTTCCCATAATGTTGCTGCAGGAAATTTTGCCATGGATGGTATCATTCCTTTCTGCAGACAAACAAGCAGAAGTTCAGAAGTTCTTAAATGAAATTACACCAATGGAGAAAGAACTGCAAGAGGTTTTGATTGCTTGGCTTGGCAGCAACAGCCAAATCTTCACCGAGGACCGCTCACTGAATGAAGTTGTTCAATGTGCCGATGGATTCCTGCATAAGAAAAGACCACGTGGGTTGAGTTATTGCAATAACAATTTTAAAGCCATTTCAAATAAGATGAAAGAAAATTGCTCAGACGTAGAAGATAGAGCCAATCAAGTCAATGTTCTTTATCTTTGGCATAATGCCATCAAGAAAGATATGAAAGAGTTGCTAGAAGAACTTCATCAAATCAGAAACACCACTTGTTTTCATAATTTGGATTCGCTACTCATCCAACTAAAATTCTTCGCTGATGTTCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTCACCCAGTTTTGAGTGAACTTGCTAACGGCTGGTTGACCAAGTCAAGTGAACAATTTCTCGGAGAAAGTCATATTGAAGATTTGCAGCAGTTGCTTTTGTATGATGCTGAAAGCGGTATTCCTTTGCCAGATTTCGTGGAGAAGCTTTGCAGAGAGCTTGAACTATTTATGACAAGAATCAACAAAAAATTTGCTTTTCAAGAAACTGAGGTATTTCCTGCCATTCGCTTGAATCGCAACAATGGAATGCTAGAGGAACTCATTGGCTTGAGCCTGCACATGATGCCACTTGGGTTGCTGAAGTGCGTGATAACTTGGTTCTCAGCTCACTTGTCTGAAAATGAATCTAGGTCCATTCTCAGTGCCATAAAACAAGGAAATCTTTTTGTCCATGAAGCTTTTGCATCACTTGTACATGAGTGGTTCCGTGTTGGTTATTCAGGTAAAGCTTCCATTGAAAAATTCCAACAAGACTTGCGACATATTTTTAAAAGCAAAAACTCTTTGTTAACTGAGCAAGTCAAAGAAGCTCCCAGGTTTTCTTTCTTAAATTATGACAAACCTCATAAAGGATCTATCCTTAGTAATGGTTTGTCTTATACATTATCTTCTGGATTCAACAATGTGACCAAGTATGAGAAACCATGCTCTATGGGCATTAATATGCAAATATTTTCCCCCGTGACAGCTATGAAGTTAAACCGCCTTCCTAGATTTCAGGCATCTGATAGTTCTTCTTTTCCCTTTCTTGATGATTCTAAGCCTATTGACCTTATATTCTTCTTTCACAAAGCTATCAGGAATGATTTGGCTTACCTTGTTCTTGGATCAGCTGAGATAGAAAAAAATGTTGAGATGCTAGTGAATTTCAGCAGAAGATTTGATCTAATATGCTTTCTTCATCGAATCCATAGTGAGACAGAGGATGAGATAGCATTCCCAGCCTTAGAGGCAATGAGTAAAGTGAAAAACATTAGCCTCTCTTATACGATTGATCACAAATTCGAAGTTGAACACATCAAGAAAATATCCTGTATCCTTGAAAAGATGTCCGATCTACATTTTTCAGTTTCTAGCTTTGAAACAGATACATGGGAGCAGAGAATGCTAACTCATCATCAACTGTGCAAAAAGCTGCAGGAAATGTGCAAATCAATGCATAAAATTCTTTCTGACCACATGAATCGTGAAGAAATTGAAATTTGGCTTTTAATTAGAGAATTCTTCTCCAATAAGGAGCAAATGAAAATCGTAGGGTGCATGCTTGGAAGAATCAGGGCAGAAATATTACAAGATATGATACCTTGGTTAATGACATCTTTAACCCCGGAGGAACAACATGTTTTAATGTTCTTATGGTCCATGGTTGCCAAAAATACAATGTTTGATGAATGGTTGGCTGAGTGGTGGGATGGGTACAGGATAGAAAAGGAGGTAGAAAGTTCAAATGATCCTCCAATTCAGACTGTTGATCGGTTGGAGATCATATCTAAATATTTATCTAAAGAAGTTCTTGATGAACTCCAAGAAGAATCCACTTCTAACAAAAGCGAATTTTCTTCACAGAGGGATCATATTGGTGATAATAATAAGCAGTCTAACATTTGCAATCGTCCTGGCAAATCCCGAGTTTGTAAAGCAGATAAGATTAGTAGTGAATGTTCAGAATGCAGAAATCAATTGAGTGATAATAACAAACAAACATTCACTAATGTAACAGATATCGCAAGATCGATCAATGACAAGGGTCAGTCTTTTCAATCCCGTGAAAACTCTGGGCACTATGACCATGTTATGAAAATAAGTCCAGATGATCTGGAGATGGCTATAAGAAGGGTATCTCGTGACTCTTCCTTAGATCTGCAGAAGAAGTCATATATAATTCAGAATCTTCTTATGAGCCGCTGGATTGTTAAACAGCATATCTCTTGTTTAGAAGGCACTATGACAAACAATGGGCAGGAATTTCCTGGGCAGCATCCGTCTTACAGGGACTCTCTCAAATTAATCTATGGCTGCAAACACTACAGGAGAAGCTGTAAACTTTTAGCTTCCTGCTGCAACCAACTTTATACATGCATACATTGCCATAATGAGGCAACAGATCATTCAATTGACAGGAAATATATAACAAAGATGATGTGCATGAAGTGCTTGAAGATTCAGCCAATCAGTGCCACATGTTCAACTGTATCTTGCGGTAACTTACCCATGGCAAAATACTACTGCCGGATCTGTAGATTGTTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGGGTGGGAAAAGGCTTGGGCTTAGACTACTTTCATTGTATGAATTGCAATGCTTGTATGTCTCGTTCCCTCAAAGTACATATATGCAGAGAGAAATTTTTAGAGGATAACTGCCCCATCTGTCATGAATACATCTTCACGTCCTGCTCTCCAGTCAAGGCCCTCCCTTGTGGTCATGTCATGCACTCAACATGTTTTCAGGAGTATACCTACTTCAGTTATACCTGCCCAGTATGTTGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAAAATCCCGGACGAGCATTTGGGTCAAACTCAGATGATACTATGCAACGACTGTGAAAAGAAAGGAACTGCTCCCTTCCACTGGCTTTACCACAAATGCTCTTCTTGCGGGTCCTACAATACAAGAGTTATATGA | 3555 | 0.3887 | MSRSCRVNCYNWLIVIFPALDVHVKNVICTYSLEHDGIDDAFNSIFQYLDELMDPNVNISKPSQELICCIGILQATTFQHMQKEEEQVFPLLLQKVSIEEQASLVWQFICSVPIMLLQEILPWMVSFLSADKQAEVQKFLNEITPMEKELQEVLIAWLGSNSQIFTEDRSLNEVVQCADGFLHKKRPRGLSYCNNNFKAISNKMKENCSDVEDRANQVNVLYLWHNAIKKDMKELLEELHQIRNTTCFHNLDSLLIQLKFFADVLIFYSNAQKKFFHPVLSELANGWLTKSSEQFLGESHIEDLQQLLLYDAESGIPLPDFVEKLCRELELFMTRINKKFAFQETEVFPAIRLNRNNGMLEELIGLSLHMMPLGLLKCVITWFSAHLSENESRSILSAIKQGNLFVHEAFASLVHEWFRVGYSGKASIEKFQQDLRHIFKSKNSLLTEQVKEAPRFSFLNYDKPHKGSILSNGLSYTLSSGFNNVTKYEKPCSMGINMQIFSPVTAMKLNRLPRFQASDSSSFPFLDDSKPIDLIFFFHKAIRNDLAYLVLGSAEIEKNVEMLVNFSRRFDLICFLHRIHSETEDEIAFPALEAMSKVKNISLSYTIDHKFEVEHIKKISCILEKMSDLHFSVSSFETDTWEQRMLTHHQLCKKLQEMCKSMHKILSDHMNREEIEIWLLIREFFSNKEQMKIVGCMLGRIRAEILQDMIPWLMTSLTPEEQHVLMFLWSMVAKNTMFDEWLAEWWDGYRIEKEVESSNDPPIQTVDRLEIISKYLSKEVLDELQEESTSNKSEFSSQRDHIGDNNKQSNICNRPGKSRVCKADKISSECSECRNQLSDNNKQTFTNVTDIARSINDKGQSFQSRENSGHYDHVMKISPDDLEMAIRRVSRDSSLDLQKKSYIIQNLLMSRWIVKQHISCLEGTMTNNGQEFPGQHPSYRDSLKLIYGCKHYRRSCKLLASCCNQLYTCIHCHNEATDHSIDRKYITKMMCMKCLKIQPISATCSTVSCGNLPMAKYYCRICRLFDDEREIYHCPYCNLCRVGKGLGLDYFHCMNCNACMSRSLKVHICREKFLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTYFSYTCPVCCKSLGDMQVYFRMLDALLAEEKIPDEHLGQTQMILCNDCEKKGTAPFHWLYHKCSSCGSYNTRVI | 1184 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr12g00624 | 1184 | Gene3D | nmb1532 protein domain like | 529 | 699 | - | - | |
Accr12g00624 | 1184 | Gene3D | nmb1532 protein domain like | 14 | 110 | - | - | |
Accr12g00624 | 1184 | Gene3D | nmb1532 protein domain like | 213 | 364 | - | - | |
Accr12g00624 | 1184 | Pfam | Zinc-ribbon | 1125 | 1182 | IPR039512 | - | |
Accr12g00624 | 1184 | SMART | ring_2 | 1078 | 1119 | IPR001841 | - | |
Accr12g00624 | 1184 | MobiDBLite | consensus disorder prediction | 785 | 801 | - | - | |
Accr12g00624 | 1184 | CDD | Hr-like | 533 | 678 | - | - | |
Accr12g00624 | 1184 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 576 | 1184 | - | - | |
Accr12g00624 | 1184 | CDD | Hr-like | 15 | 90 | - | - | |
Accr12g00624 | 1184 | CDD | RING-H2_Pirh2-like | 1077 | 1119 | - | - | |
Accr12g00624 | 1184 | Pfam | CHY zinc finger | 949 | 1024 | IPR008913 | GO:0008270 | |
Accr12g00624 | 1184 | SUPERFAMILY | RING/U-box | 1065 | 1124 | - | - | |
Accr12g00624 | 1184 | SUPERFAMILY | Zinc hairpin stack | 1015 | 1069 | IPR037275 | - | |
Accr12g00624 | 1184 | ProSiteProfiles | Zinc finger CHY-type profile. | 942 | 1011 | IPR008913 | GO:0008270 | |
Accr12g00624 | 1184 | FunFam | Zinc finger protein-related isoform 1 | 1073 | 1122 | - | - | |
Accr12g00624 | 1184 | SUPERFAMILY | CHY zinc finger-like | 941 | 1005 | IPR037274 | GO:0008270 | |
Accr12g00624 | 1184 | Gene3D | - | 1149 | 1184 | - | - | |
Accr12g00624 | 1184 | MobiDBLite | consensus disorder prediction | 785 | 814 | - | - | |
Accr12g00624 | 1184 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1071 | 1121 | IPR013083 | - | |
Accr12g00624 | 1184 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1014 | 1077 | IPR017921 | - | |
Accr12g00624 | 1184 | Coils | Coil | 225 | 245 | - | - | |
Accr12g00624 | 1184 | ProSiteProfiles | Zinc finger RING-type profile. | 1078 | 1119 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr12g00624 | Accr-Chr12 | 5817531 | 5824137 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr12g00624 | 15 | 774 | C2H2 Transcription Factor Family | AT3G18290 | 32.029 | 4.26e-106 | 361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr12g00624 | K16276 | - | gmx:100802706 | 1646.33 |