Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00623 ATGGACCTTCTTGCGCCGGATAAGGAGGAGAATACTGAACATGACGCATCGGATTGTGTTTCCCGAGTTCGACTCGTCGATGCTCCAATACTCTTATTTGTTTGCTTCCACGAGGCTCTGCGCGGAGAACTCAACGAGCTTCGGAGCTTGGCAGAAACGTTGTCGCCGCCGCCAGAGAATGCATCACGCAACCCCGAGCTCATTCTTCAACTTCAACAAAGATTCGAGTTTCTCAAACTAGTTCTCAAGTATCACTGCGTCGTGGAAGATGAGGTTATCTTCCCTGCATTGGATGTACATGTAAAAAATGTAATTTGTACTTATTCCCTTGAACATGATGGCATCGATGACGCCTTCAACTCAATCTTTCAATATTTAGATGAGTTGATGGATCCAAATGTGAATATTTCCAAACCGTCTCAAGAACTTATATGCTGCATTGGAATCTTGCAAGCCACCACATTCCAGCATATGCAGAAAGAAGAAGAGCAGGTTTTTCCTCTCTTGCTGCAGAAAGTTTCTATCGAGGAACAGGCTTCGCTGGTCTGGCAATTCATATGCAGTGTTCCCATAATGTTGCTGCAGGAAATTTTGCCATGGATGGTATCATTCCTTTCTGCAGACAAACAAGCAGAAGTTCAGAAGTTCTTAAATGAAATTACACCAATGGAGAAAGAACTGCAAGAGGTTTTGATTGCTTGGCTTGGCAGCAACAGCCAAATCTTCACCGAGGACCGCTCACTGAATGAAGTTGTTCAATGTGCCGATGGATTCCTGCATAAGAAAAGACCACGTGGGTTGAGTTATTGCAATAACAATTTTAAAGCCATTTCAAATAAGATGAAAGAAAATTGCTCAGACGTAGAAGATAGAGCCAATCAAGTCAATGTTCTTTATCTTTGGCATAATGCCATCAAGAAAGATATGAAAGAGTTGCTAGAAGAACTTCATCAAATCAGAAACACCACTTGTTTTCATAATTTGGATTCGCTACTCATCCAACTAAAATTCTTCGCTGATGTTCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTCACCCAGTTTTGAGTGAACTTGCTAACGGCTGGTTGACCAAGTCAAGTGAACAATTTCTCGGAGAAAGTCATATTGAAGATTTGCAGCAGTTGCTTTTGTATGATGCTGAAAGCGGTATTCCTTTGCCAGATTTCGTGGAGAAGCTTTGCAGAGAGCTTGAACTATTTATGACAAGAATCAACAAAAAATTTGCTTTTCAAGAAACTGAGGTATTTCCTGCCATTCGCTTGAATCGCAACAATGGAATGCTAGAGGAACTCATTGGCTTGAGCCTGCACATGATGCCACTTGGGTTGCTGAAGTGCGTGATAACTTGGTTCTCAGCTCACTTGTCTGAAAATGAATCTAGGTCCATTCTCAGTGCCATAAAACAAGGAAATCTTTTTGTCCATGAAGCTTTTGCATCACTTGTACATGAGTGGTTCCGTGTTGGTTATTCAGGTAAAGCTTCCATTGAAAAATTCCAACAAGACTTGCGACATATTTTTAAAAGCAAAAACTCTTTGTTAACTGAGCAAGTCAAAGAAGCTCCCAGGTTTTCTTTCTTAAATTATGACAAACCTCATAAAGGATCTATCCTTAGTAATGGTTTGTCTTATACATTATCTTCTGGATTCAACAATGTGACCAAGTATGAGAAACCATGCTCTATGGGCATTAATATGCAAATATTTTCCCCCGTGACAGCTATGAAGTTAAACCGCCTTCCTAGATTTCAGGCATCTGATAGTTCTTCTTTTCCCTTTCTTGATGATTCTAAGCCTATTGACCTTATATTCTTCTTTCACAAAGCTATCAGGAATGATTTGGCTTACCTTGTTCTTGGATCAGCTGAGATAGAAAAAAATGTTGAGATGCTAGTGAATTTCAGCAGAAGATTTGATCTAATATGCTTTCTTCATCGAATCCATAGTGAGACAGAGGATGAGATAGCATTCCCAGCCTTAGAGGCAATGAGTAAAGTGAAAAACATTAGCCTCTCTTATACGATTGATCACAAATTCGAAGTTGAACACATCAAGAAAATATCCTGTATCCTTGAAAAGATGTCCGATCTACATTTTTCAGTTTCTAGCTTTGAAACAGATACATGGGAGCAGAGAATGCTAACTCATCATCAACTGTGCAAAAAGCTGCAGGAAATGTGCAAATCAATGCATAAAATTCTTTCTGACCACATGAATCGTGAAGAAATTGAAATTTGGCTTTTAATTAGAGAATTCTTCTCCAATAAGGAGCAAATGAAAATCGTAGGGTGCATGCTTGGAAGAATCAGGGCAGAAATATTACAAGATATGATACCTTGGTTAATGACATCTTTAACCCCGGAGGAACAACATGTTTTAATGTTCTTATGGTCCATGGTTGCCAAAAATACAATGTTTGATGAATGGTTGGCTGAGTGGTGGGATGGGTACAGGATAGAAAAGGAGGTAGAAAGTTCAAATGATCCTCCAATTCAGACTGTTGATCGGTTGGAGATCATATCTAAATATTTATCTAAAGAAGTTCTTGATGAACTCCAAGAAGAATCCACTTCTAACAAAAGCGAATTTTCTTCACAGAGGGATCATATTGGTGATAATAATAAGCAGTCTAACATTTGCAATCGTCCTGGCAAATCCCGAGTTTGTAAAGCAGATAAGATTAGTAGTGAATGTTCAGAATGCAGAAATCAATTGAGTGATAATAACAAACAAACATTCACTAATGTAACAGATATCGCAAGATCGATCAATGACAAGGGTCAGTCTTTTCAATCCCGTGAAAACTCTGGGCACTATGACCATGTTATGAAAATAAGTCCAGATGATCTGGAGATGGCTATAAGAAGGGTATCTCGTGACTCTTCCTTAGATCTGCAGAAGAAGTCATATATAATTCAGAATCTTCTTATGAGCCGCTGGATTGTTAAACAGCATATCTCTTGTTTAGAAGGCACTATGACAAACAATGGGCAGGAATTTCCTGGGCAGCATCCGTCTTACAGGGACTCTCTCAAATTAATCTATGGCTGCAAACACTACAGGAGAAGCTGTAAACTTTTAGCTTCCTGCTGCAACCAACTTTATACATGCATACATTGCCATAATGAGGCAACAGATCATTCAATTGACAGGAAATATATAACAAAGATGATGTGCATGAAGTGCTTGAAGATTCAGCCAATCAGTGCCACATGTTCAACTGTATCTTGCGGTAACTTACCCATGGCAAAATACTACTGCCGGATCTGTAGATTGTTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGGGTGGGAAAAGGCTTGGGCTTAGACTACTTTCATTGTATGAATTGCAATGCTTGTATGTCTCGTTCCCTCAAAGTACATATATGCAGAGAGAAATTTTTAGAGGATAACTGCCCCATCTGTCATGAATACATCTTCACGTCCTGCTCTCCAGTCAAGGCCCTCCCTTGTGGTCATGTCATGCACTCAACATGTTTTCAGGAGTATACCTACTTCAGTTATACCTGCCCAGTATGTTGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAAAATCCCGGACGAGCATTTGGGTCAAACTCAGATGATACTATGCAACGACTGTGAAAAGAAAGGAACTGCTCCCTTCCACTGGCTTTACCACAAATGCTCTTCTTGCGGGTCCTACAATACAAGAGTTATATGA 3786 0.3975 MDLLAPDKEENTEHDASDCVSRVRLVDAPILLFVCFHEALRGELNELRSLAETLSPPPENASRNPELILQLQQRFEFLKLVLKYHCVVEDEVIFPALDVHVKNVICTYSLEHDGIDDAFNSIFQYLDELMDPNVNISKPSQELICCIGILQATTFQHMQKEEEQVFPLLLQKVSIEEQASLVWQFICSVPIMLLQEILPWMVSFLSADKQAEVQKFLNEITPMEKELQEVLIAWLGSNSQIFTEDRSLNEVVQCADGFLHKKRPRGLSYCNNNFKAISNKMKENCSDVEDRANQVNVLYLWHNAIKKDMKELLEELHQIRNTTCFHNLDSLLIQLKFFADVLIFYSNAQKKFFHPVLSELANGWLTKSSEQFLGESHIEDLQQLLLYDAESGIPLPDFVEKLCRELELFMTRINKKFAFQETEVFPAIRLNRNNGMLEELIGLSLHMMPLGLLKCVITWFSAHLSENESRSILSAIKQGNLFVHEAFASLVHEWFRVGYSGKASIEKFQQDLRHIFKSKNSLLTEQVKEAPRFSFLNYDKPHKGSILSNGLSYTLSSGFNNVTKYEKPCSMGINMQIFSPVTAMKLNRLPRFQASDSSSFPFLDDSKPIDLIFFFHKAIRNDLAYLVLGSAEIEKNVEMLVNFSRRFDLICFLHRIHSETEDEIAFPALEAMSKVKNISLSYTIDHKFEVEHIKKISCILEKMSDLHFSVSSFETDTWEQRMLTHHQLCKKLQEMCKSMHKILSDHMNREEIEIWLLIREFFSNKEQMKIVGCMLGRIRAEILQDMIPWLMTSLTPEEQHVLMFLWSMVAKNTMFDEWLAEWWDGYRIEKEVESSNDPPIQTVDRLEIISKYLSKEVLDELQEESTSNKSEFSSQRDHIGDNNKQSNICNRPGKSRVCKADKISSECSECRNQLSDNNKQTFTNVTDIARSINDKGQSFQSRENSGHYDHVMKISPDDLEMAIRRVSRDSSLDLQKKSYIIQNLLMSRWIVKQHISCLEGTMTNNGQEFPGQHPSYRDSLKLIYGCKHYRRSCKLLASCCNQLYTCIHCHNEATDHSIDRKYITKMMCMKCLKIQPISATCSTVSCGNLPMAKYYCRICRLFDDEREIYHCPYCNLCRVGKGLGLDYFHCMNCNACMSRSLKVHICREKFLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTYFSYTCPVCCKSLGDMQVYFRMLDALLAEEKIPDEHLGQTQMILCNDCEKKGTAPFHWLYHKCSSCGSYNTRVI 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00623 1261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1148 1198 IPR013083 -
Accr12g00623 1261 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 653 1261 - -
Accr12g00623 1261 Pfam CHY zinc finger 1026 1101 IPR008913 GO:0008270
Accr12g00623 1261 Coils Coil 302 322 - -
Accr12g00623 1261 Gene3D - 1226 1261 - -
Accr12g00623 1261 Gene3D nmb1532 protein domain like 606 776 - -
Accr12g00623 1261 Gene3D nmb1532 protein domain like 28 187 - -
Accr12g00623 1261 Gene3D nmb1532 protein domain like 290 441 - -
Accr12g00623 1261 ProSiteProfiles Zinc finger CTCHY-type profile. 1091 1154 IPR017921 -
Accr12g00623 1261 MobiDBLite consensus disorder prediction 862 878 - -
Accr12g00623 1261 ProSiteProfiles Zinc finger RING-type profile. 1155 1196 IPR001841 -
Accr12g00623 1261 SMART ring_2 1155 1196 IPR001841 -
Accr12g00623 1261 MobiDBLite consensus disorder prediction 862 891 - -
Accr12g00623 1261 Pfam Hemerythrin HHE cation binding domain 37 169 IPR012312 -
Accr12g00623 1261 CDD Hr-like 610 755 - -
Accr12g00623 1261 FunFam Zinc finger protein-related isoform 1 1150 1199 - -
Accr12g00623 1261 SUPERFAMILY RING/U-box 1142 1201 - -
Accr12g00623 1261 SUPERFAMILY CHY zinc finger-like 1018 1082 IPR037274 GO:0008270
Accr12g00623 1261 CDD RING-H2_Pirh2-like 1154 1196 - -
Accr12g00623 1261 Pfam Zinc-ribbon 1202 1259 IPR039512 -
Accr12g00623 1261 CDD Hr-like 36 167 - -
Accr12g00623 1261 SUPERFAMILY Zinc hairpin stack 1092 1146 IPR037275 -
Accr12g00623 1261 ProSiteProfiles Zinc finger CHY-type profile. 1019 1088 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00623 Accr-Chr12 5813034 5824137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00623 28 851 C2H2 Transcription Factor Family AT3G18290 32.426 1.60e-118 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00623 K16276 - gmx:100802706 1737.24