Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00615 ATGGTGAGACCTCCATGCTGTGAGAAGCTCAGTGTTAAAAAAGGTGTTTGGACTCCAGAAGAAGATGCAGAAATGATGGCATATGTCTCAAAGCATGGATCTGGTAACTGGACTTCTTCTTTTCCCAAAAAAACAGGATTTAAGAGGTGTGGGAAAAGCTGCAGGCTCAAGTGGACTAATTACCTGAGGCCAGATCTTAAGAAAGATAGCTTCACACCCCAAGAAGAGGATTTAATTCTTAAGCTTCACGCAGCCATTGGAAGCAGGTGGCCTATGATTGCCCAACAACTTCCTGGGAGAACAGACAACGATGTAAAGAATTACTGGAACACAAGGCTGAAGAAGAAGCTCACTGAGATGGGAATAGACCCTATCACACACAAGCCCTTCTCTAAACTCCTAGCTGATTATGGAAACATTGGAGGCATCCAGAAACCAAACACTAGAATTGGGCCTCTCAGTAAAGACCTGAAGAACACAGTATTGTTCAGATCAGACCCATTTCCTAAGCTACCTTCAAGTTCACCAAAATTGGAACCACTAACAGAAAGTTGCAGCTTTTTCAGTAACAGAGACATGGTGATGGAGAAGGAGACAATCCCAGGAACTATATTTGGGGAAGGCTTCTTATCGTCGTCATCAATTTCATCAACATCTTCTTCTTCTATCTGTTCTAATGCTGCTCAAGAAGAAGGCTTGTCTTTACCCTTTTGTTGGAATGATTTTCTTCTAGAAGATGTTTTCCCACCACCACCTGCTGCTGCTGATAACCCAGAGAATGAAAATCCGACAACCAACGAGAATAAGAATGAGGTGACGTCACAGCAAGTCCCCACCAGCAGTAGTAGTGACGTTCGTTATTCAACGTCATCCTCTGAGATTTCTTTCGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTCTTGAATTTCCCTCACCTAATGGAGGAACCTTCCACGTCCAACTACTGA 972 0.4311 MVRPPCCEKLSVKKGVWTPEEDAEMMAYVSKHGSGNWTSSFPKKTGFKRCGKSCRLKWTNYLRPDLKKDSFTPQEEDLILKLHAAIGSRWPMIAQQLPGRTDNDVKNYWNTRLKKKLTEMGIDPITHKPFSKLLADYGNIGGIQKPNTRIGPLSKDLKNTVLFRSDPFPKLPSSSPKLEPLTESCSFFSNRDMVMEKETIPGTIFGEGFLSSSSISSTSSSSICSNAAQEEGLSLPFCWNDFLLEDVFPPPPAAADNPENENPTTNENKNEVTSQQVPTSSSSDVRYSTSSSEISFVEAMLDQENEMFLNFPHLMEEPSTSNY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00615 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Accr12g00615 323 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Accr12g00615 323 PANTHER F14D16.11-RELATED 1 319 - -
Accr12g00615 323 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Accr12g00615 323 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Accr12g00615 323 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Accr12g00615 323 FunFam Os07g0634900 protein 70 129 - -
Accr12g00615 323 SMART sant 67 115 IPR001005 -
Accr12g00615 323 SMART sant 13 64 IPR001005 -
Accr12g00615 323 MobiDBLite consensus disorder prediction 249 288 - -
Accr12g00615 323 Gene3D - 70 117 - -
Accr12g00615 323 MobiDBLite consensus disorder prediction 258 288 - -
Accr12g00615 323 CDD SANT 70 113 IPR001005 -
Accr12g00615 323 Gene3D - 11 68 - -
Accr12g00615 323 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Accr12g00615 323 CDD SANT 17 62 IPR001005 -
Accr12g00615 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Accr12g00615 323 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00615 Accr-Chr12 5740267 5742388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00615 1 317 MYB Transcription Factor Family AT3G28470 44.343 5.25e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr12g00615 Myb_DNA-binding 5.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00615 K09422 - cave:132176661 333.954