Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00610 ATGGATCCTCCTCTCATCAACGAGTCTACATTCTCCCACGCTAATCCTTCTGCCTATAGTCTCGCCGAGATTTGGCCTTTCCCTGGGGACCACCCTGAATTAGGCCTCCGAATGCCTCATTTAGGTCATAATTTGGGCCCCTTCCCCGATAATTCCCGCCATCGAGATGGCTCCGCCGAGGAGTCCACCGTCACCGAGCAGAGCGTCGGCGGACAAAATCACAGGAAGAGGAAAGATGCCACCTCTGAGGACGAGTCCTCAAAGATGGCTTCCATGATTAGTGCCAATGATTTGAATGATTCTGGCGATAAACGGATAAAATTAGGAGTATCCAAGGATGAAAATAGTGGTCCGAAGGCTGAAGTAGAAGCAAGTTCAGTAGCTGGTAGCAAGTCAGCTGAACATAGTACTAAACCTCCCGAGCCTCCTAAGCCAGACTATATACACGTGAGAGCAAGAAGAGGCCAAGCTACTGATAGCCACAGTCTTGCAGAACGAGCAAGAAGGGAAAAGATCAGCGAGAGGATGAAAATTCTACAAGATTTGGTCCCTGGATGTAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATCAATTATATTCAATCACTGCAGCGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAATGTGAACCCGAATGTTGAAGGGTTCCCTTCAAAAGATCTTGGTGCTCAGACATTTGACGTTGCTGGAATGATATTTGGATCACAAGCAAGCAGGACGTTCGCCGAGGGAACTCAACTTGGATGGCTGCAAATGCAGATAGGTGGTGGTTTCGAGAGAGCAACATAG 840 0.4714 MDPPLINESTFSHANPSAYSLAEIWPFPGDHPELGLRMPHLGHNLGPFPDNSRHRDGSAEESTVTEQSVGGQNHRKRKDATSEDESSKMASMISANDLNDSGDKRIKLGVSKDENSGPKAEVEASSVAGSKSAEHSTKPPEPPKPDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNVNPNVEGFPSKDLGAQTFDVAGMIFGSQASRTFAEGTQLGWLQMQIGGGFERAT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00610 279 CDD bHLH_AtBPE_like 146 229 - -
Accr12g00610 279 MobiDBLite consensus disorder prediction 38 147 - -
Accr12g00610 279 FunFam Basic helix-loop-helix transcription factor 153 225 - -
Accr12g00610 279 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Accr12g00610 279 MobiDBLite consensus disorder prediction 71 85 - -
Accr12g00610 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983
Accr12g00610 279 SMART finulus 162 212 IPR011598 GO:0046983
Accr12g00610 279 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 60 249 IPR024097 GO:0006355
Accr12g00610 279 Gene3D - 153 229 IPR036638 GO:0046983
Accr12g00610 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 225 IPR036638 GO:0046983
Accr12g00610 279 Coils Coil 203 223 - -
Accr12g00610 279 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00610 Accr-Chr12 5720076 5722824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00610 1 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 55.634 3.96e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr12g00610 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00610 - - zju:107418528 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00610 12 5720076 5722824 Accr12g00610 12 5720076 5722824 ECH