Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00607 ATGTCTCACAAGTGCGCCACCCCCGATTCTGCCTTAAGCGCCGATGGTGATGGTTCCGCCGGAGAGATCATGCTGTTTGGGGTTAGAGTTGTGGTCGATTCCATGAGGAAGAGCGTGAGTATGAATAATCTCTCTCAGTACGAGCATCCTCAGGACGTTGCAAACAATAATAATAACGGCAACAAGGAAGATTCTCTGGCTGCCGGCTATGCCTCTGCCGATGAAGCTGCTGCTCATAATTCTGGCAGGCATCGCGAGCGTGAGCGTAAGCGAGGAGTTCCGTGGACAGAGGAAGAGCACAAGCTGTTCTTGCTGGGATTGCAGAAAGTTGGTAAAGGTGATTGGAGAGGGATCTCAAGGAACTACGTGAAAACTCGGACGCCTACACAGGTTGCGAGCCATGCTCAAAAGTACTTTCTCCGGCGAAGCAACCTCAATCGCCGGCGCCGTAGATCTAGCCTTTTCGATATCACCACCGACACGGTCTCTGCAATCCCAATCGAAGAACAGATCCAGCATCAAGATTATATGTCTCTTTCAAATCCTGTGTGCGCTGGAACCCCTGAAACTACGAACATAAAAGGATTTTCAATGATGCCAGTATATCCTATGAATATTGTTGGTTCTGGAATGATTTCAGTCCCAGCAGTTTCACATCCTAAAGCTTCTGAATCGTCTATTATCACATCCATGAGTTCAAGTTCATCTGTCGATCCACCAAGTTTGTCTCTCGGCTTATCCTTGTCTTCTGATCAAAGACAAACTTCAACAGCAAGGCATTCATCTATACTCTCCATGCCGGGTTTCAACAATGGAGATAACATTATAAGTGTTGCTTGA 840 0.4714 MSHKCATPDSALSADGDGSAGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDVANNNNNGNKEDSLAAGYASADEAAAHNSGRHRERERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPIEEQIQHQDYMSLSNPVCAGTPETTNIKGFSMMPVYPMNIVGSGMISVPAVSHPKASESSIITSMSSSSSVDPPSLSLGLSLSSDQRQTSTARHSSILSMPGFNNGDNIISVA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00607 279 PANTHER TRANSCRIPTION FACTOR KUA1 22 232 - -
Accr12g00607 279 SMART sant 91 141 IPR001005 -
Accr12g00607 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Accr12g00607 279 CDD SANT 94 139 IPR001005 -
Accr12g00607 279 MobiDBLite consensus disorder prediction 74 93 - -
Accr12g00607 279 MobiDBLite consensus disorder prediction 229 265 - -
Accr12g00607 279 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Accr12g00607 279 MobiDBLite consensus disorder prediction 45 65 - -
Accr12g00607 279 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Accr12g00607 279 Gene3D - 93 145 - -
Accr12g00607 279 ProSiteProfiles SANT domain profile. 90 143 IPR017884 -
Accr12g00607 279 MobiDBLite consensus disorder prediction 78 93 - -
Accr12g00607 279 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Accr12g00607 279 FunFam transcription factor MYB1R1 93 144 - -
Accr12g00607 279 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00607 Accr-Chr12 5700935 5702457 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Accr12g00607 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00607 - - gmx:778059 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00102 8 1442745 1444385 Accr12g00607 12 5700935 5702457 CCT
Accr12g00607 12 5700935 5702457 Accr12g00607 12 5700935 5702457 ECH