Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00601 ATGGTGGGTTCGGCAGCTCTGGCACCAGAGCCAAACTCAGAGGTATTTTCATGGCTAAAATCTCTTCCCCTGGCTCCAGAGTACCGCCCTAGCTTGGCTGAGTTCCAAGATCCGATCTCATACATTTTCAAGATCGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAAATTGTTCCCCCAGTGCCACCTTCTTCGAAAAAGACAGCAATTGCGAATCTTAATCGCTCGTTGGCTGCACGAGCTGCTTCTTCTGACTTTTCTAATTCGGAATCCCAGCCTACATTCACCACAATGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCAACGGCCCGCGCATCGTCCTGTGTGGCAGAGTGGGGAATACTACACATTTCAGGAATTTGAAGCGAAGGCCAAGGCATTTGAGAAGAACTATCTGAAGAAATGGGTTAAGAAAGGTGGTCTTACGCCTCTGGAGATAGAAACACTTTACTGGAAGGCGACAGTGGATAAACCCTTTTCGGTGGAGTACGCAAATGACATGCCTGGTTCGGCTTTTGTTCCCGTGAATGGGAAAAAATATAGAGAGGCAGGGGAGGAAATGACTCTTGGTGAGACTGCATGGAACATGAGGGGCGTGTCACGGGCAAATGGCTCTCTGTTGAAGTTTATGAAGGAGGAGATTCCAGGCGTTACTTCACCGATGGTGTACTTAGCTATGCTGTTCAGCTGGTTTGCCTGGCATGCAGAGGATCATGACCTGCATAGCTTGAATTACCTTCATATGGGGGCAGGCAAGACTTGGTATGGTGTGCCGCGGGATGCCGCCGTCGCATTTGAGGAAGTGGTCAGAATTCAAGGGTATGGAGGAGAAATAAATCCTCTTGTTACTTTTGCTCTACTTGGTGAGAAGACCACAGTGATGTCGCCTGAAGTATTTATTAGTGCAGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACTTTTCCAAGAGCTTATCACACTGGATTAAGTCATGGATTTAATTGCGGGGAGGCAGCTAACATTGTAACACCTGAATGGTTGAGGTTTGCTAAAGATGCTGCTATTAGGAGGGCGTCAATAAATTACCCACCCATGGTTTCGCATTTCCAGTTACTTTACGATCTTGCACTGGCTTTGTGTTCGAGAATTCCTGGGGGCATCAGTGCTGAACCACGGAGTTCTCGGCTCAAAGATAAGAGGAAAAGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTATTACAGAACAATGACTTGCTTCATGGTCTTGGTAAAGGATCTACTGTAGTACTTCTTCCTCAGAGCTCTTCTGATATTTCTGTTTGCTCAAAATTACGTGTTGGTTCCCAGCAAATGAGGGTGAACCCTGGGTATTCTCCCAGTGCATTCAATTCTGAGGGAGTGAATTCCTCAAAAGGTTTTGTTTCTGATGACCTGGTTTTCAGCAGAACCACACAAGTGAAAGGATTTTATTCTGTAAAAGAGAAGCTTGCTTCTTTGTATGAAAGGAACAGGGTCTCCTCATTAAGTGTAAATGCTAATATATGCTCTTCAAGTTCTGTGCCACTTCAAAGAAACTCTGAAAGGGAGACAAGCCAAGGAGATGGGTTGTCAGGCCAGAGACTATTTTCATGTGTCACTTGTGGTATATTAAGCTTTGCATGCGTTGCTATTGTCCAGCCTAGGGAACCAGCGGCTAGGTGCCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGCTGGTTCTGGAGTAAGTGCCAATAAGTTTACACATGCCCATGGAGATGCAACTACTTCTGAGAAAAACACCTTTGCAGGACAAAAAGAAACATCAGCCCTTGACTTATTGGCATCAGCATATGGAAATTCATCTGATTCAGAGGAAGATCAAGTTGACCCAGATGATAAATCTAATGTTATGAACCGTCCATCAGGTAGTTTATCTCAGAATATGTCTAGCTTGCCTTCTCATTTCCAAGATTGCTATGCAAGTGCAGTCAAGGTTCATGGTGATTATGGGCAAAAAGCAAACTCAGAAGGTTGTTATACCACCTCAGGGACCGCATTTAAGAATATGAGTTGTACCTTAAATTATTCCCAAGATGTTCATGAGGCTGAAACACCAATGCTTTGTAACACTGGATGTCCCATTGATGATGGAAGTGCTTCATTGTTGCCACATTCTGACGAAGATTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGCTGAAGTGGTGCAACAACTTCATCTAATAGGAGGAGCACACATATTACTTCTTTGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCCAAAAATGTGGCGGAAGAACTGGGTATGGATGACGTATGGAAGAGTCTTGCTTACAGAAATGCCACCCCAGAAGATGAGGAGAGAATCCAGGCGGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGCAGACTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGTGCCAATCTTAGCCGATCTCCTCTTTACAGTAAGCAGATGCCTTATAATTCTGTCATATGTTATGCATTTGGCCGTAGTACTCCTGCAAGCCCACCCACAAAACCCAAGGTTTACCAAAGAAGGGCCAGCAAGCAGAAAAAGGTGGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCTAATCAGGTCCATCCCCTTTTAGCCAAAAGAGATTCTGAGGATGATGATGAGAAAATCATACATGGCTGGGCGTTGCCTGACAGGAAAATTGAGAGATCAGAAAGTGTCCACACAGACAGTTTTACTACTAGAAAATATGCTAAGAAGAGGAAAACGACTGTAGAGAGTAGAAAAGCCAGGAAAGCCAGTTTCGCTGAGAGAGAATATGTTTCGGATAATTCTATCAGAGAGAAATACAACCCACAGCAAAGGACATATTCTAGAAGCAAGCAAGCCAAATATTTTGATAGAGACGATGCAGCGTCAGTAGGGGTTCATACTTCTCTGCAGCGATATCAAAAATCTACAGGAAAGCAAGCCAAATGCATAGAAAGTGACGAAGTTTCAGATGATTCAATGGATGATAATTCTAACATTCGGCAAGGAAGGAATTTCAATGTCAATGAACCTAAATTTGTTGACAGTGATGTTGCCTCAGATGATGCAATGGGATACGATTCTGATTCACAACTGAGGAGAGAGCTTAGCAATGAACAGATTGAAAACTCAGAAAGAGATGGAATTTCAGAGGATTTTATGGGTGTTGATTCTCTTAAGTGGAAGTGGAAGCCTTGTAAAATCAAGCCAGCTAAATATGTTGCTAAAGATGTAATTTCTGATGACCAAATGAAGGATCATTTTCGGAATCAGCAAAGAATTCCTAAAAGCAGACCAGCCAAATACCTTGATGGAGAAGATGTCATGGTATCTGGGGATCAACTGCAGGGCCGAATACATAAGCAGCAAAGATCTAAAGGCAGGCAAGCCAAATGCATCGCCAGAGAGAATATTACATCTGATGACCAACTGGAGGACCATTCTGGCAAGTGCCACAGAAGGATTCCTAAAAGCAGACAAGGTAAATGCCTAGTTGAGGAAGATGTAGCGTCTGTTGACCAATTGGAGGATCGCTTTCAGAAGGCACGTGGTACTATTCCAAAGAGCAGGCAAAATAAACGCAAGAATAAAGTTATGGTTGACTCATCTGATAACTATTCTCATCTGCTGCATAGAACTCCTCAGGGGAAGCAAGTTAAAAGCATGGGTGAAGAAGACATAAATTCTGATGATCAAATGGAGGATTCGTCTCGTCAGCAGCGAAGGAGGATTCTTCGAAGCCAGCAATCTAAATTGGAGACACAGCAAGAAATGAAACAATCTGACACTTTCTGTGTGAAAGAACAGACTTGCCGGCCTCTAAAGCGAAGTGCTCAGCTGCTAGTGAAATCTAAGACCTCTCAGAAAATGAAGCAGCCTCCTCGAGTGCAGAAAAATCAACCTAAAAGCTTCCGAGATTTTAACTTAAATTCAGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGTACCAAAAGTTGAGTCTGAAGCAAAACCAAAAGGAAAGGCAACCCAGAGGAAGAAGGCGAACAAGGCTATAGCTTTGAAGATTTCCAAAAAGAAGGATGAGGAAACAGAATATGATTGTGATATTGATGGGTGCACTATGAGTTTTGGCTCTAAACAGGAGTTAGCATTGCACAAGAGAAACATTTGTCCTGTTAAGGGATGTGGAAAGAAATTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTCCACGATGATAACCGCCCTCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCACGTACCGAGCATATTCGAGTGCATACTGGTGCTCGTCCATACGTCTGTGCTGAGCCAGGATGTGCGCAAACATTCAGGTTTGTTTCTGATTTCAGCCGTCACAAGCGAAAGACCGGCCATTTAACAAAGAAGTGTCGTTAA 4560 0.439 MVGSAALAPEPNSEVFSWLKSLPLAPEYRPSLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSSKKTAIANLNRSLAARAASSDFSNSESQPTFTTMQQQIGFCPRKQRPAHRPVWQSGEYYTFQEFEAKAKAFEKNYLKKWVKKGGLTPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVNGKKYREAGEEMTLGETAWNMRGVSRANGSLLKFMKEEIPGVTSPMVYLAMLFSWFAWHAEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIQGYGGEINPLVTFALLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGLSHGFNCGEAANIVTPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLKDKRKSEGETVIKELFVQDVLQNNDLLHGLGKGSTVVLLPQSSSDISVCSKLRVGSQQMRVNPGYSPSAFNSEGVNSSKGFVSDDLVFSRTTQVKGFYSVKEKLASLYERNRVSSLSVNANICSSSSVPLQRNSERETSQGDGLSGQRLFSCVTCGILSFACVAIVQPREPAARCLMSADCSFFNDWVAGSGVSANKFTHAHGDATTSEKNTFAGQKETSALDLLASAYGNSSDSEEDQVDPDDKSNVMNRPSGSLSQNMSSLPSHFQDCYASAVKVHGDYGQKANSEGCYTTSGTAFKNMSCTLNYSQDVHEAETPMLCNTGCPIDDGSASLLPHSDEDSSRLHVFCLEHAAEVVQQLHLIGGAHILLLCHPDYPKVEAEAKNVAEELGMDDVWKSLAYRNATPEDEERIQAALDSEEAIPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVICYAFGRSTPASPPTKPKVYQRRASKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDEKIIHGWALPDRKIERSESVHTDSFTTRKYAKKRKTTVESRKARKASFAEREYVSDNSIREKYNPQQRTYSRSKQAKYFDRDDAASVGVHTSLQRYQKSTGKQAKCIESDEVSDDSMDDNSNIRQGRNFNVNEPKFVDSDVASDDAMGYDSDSQLRRELSNEQIENSERDGISEDFMGVDSLKWKWKPCKIKPAKYVAKDVISDDQMKDHFRNQQRIPKSRPAKYLDGEDVMVSGDQLQGRIHKQQRSKGRQAKCIARENITSDDQLEDHSGKCHRRIPKSRQGKCLVEEDVASVDQLEDRFQKARGTIPKSRQNKRKNKVMVDSSDNYSHLLHRTPQGKQVKSMGEEDINSDDQMEDSSRQQRRRILRSQQSKLETQQEMKQSDTFCVKEQTCRPLKRSAQLLVKSKTSQKMKQPPRVQKNQPKSFRDFNLNSEEEEEGGPSTRLRKRVPKVESEAKPKGKATQRKKANKAIALKISKKKDEETEYDCDIDGCTMSFGSKQELALHKRNICPVKGCGKKFFSHKYLVQHRRVHDDNRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCAQTFRFVSDFSRHKRKTGHLTKKCR 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00601 1519 MobiDBLite consensus disorder prediction 1320 1346 - -
Accr12g00601 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1457 1486 IPR013087 -
Accr12g00601 1519 MobiDBLite consensus disorder prediction 1021 1044 - -
Accr12g00601 1519 SUPERFAMILY beta-beta-alpha zinc fingers 1475 1509 IPR036236 -
Accr12g00601 1519 MobiDBLite consensus disorder prediction 1263 1282 - -
Accr12g00601 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1429 1451 IPR013087 -
Accr12g00601 1519 MobiDBLite consensus disorder prediction 1222 1282 - -
Accr12g00601 1519 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Accr12g00601 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1487 1518 IPR013087 -
Accr12g00601 1519 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Accr12g00601 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1427 1456 IPR013087 -
Accr12g00601 1519 MobiDBLite consensus disorder prediction 1021 1038 - -
Accr12g00601 1519 SMART JmjN_1 24 65 IPR003349 -
Accr12g00601 1519 SMART cupin_9 196 365 IPR003347 -
Accr12g00601 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1459 1481 IPR013087 -
Accr12g00601 1519 MobiDBLite consensus disorder prediction 633 662 - -
Accr12g00601 1519 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Accr12g00601 1519 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1453 - -
Accr12g00601 1519 MobiDBLite consensus disorder prediction 1347 1380 - -
Accr12g00601 1519 Gene3D Classic Zinc Finger 1426 1511 - -
Accr12g00601 1519 MobiDBLite consensus disorder prediction 1317 1386 - -
Accr12g00601 1519 SMART c2h2final6 1427 1451 IPR013087 -
Accr12g00601 1519 SMART c2h2final6 1457 1481 IPR013087 -
Accr12g00601 1519 SMART c2h2final6 1487 1513 IPR013087 -
Accr12g00601 1519 SMART c2h2final6 1404 1426 IPR013087 -
Accr12g00601 1519 Gene3D Cupin 18 369 - -
Accr12g00601 1519 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Accr12g00601 1519 FunFam Probable lysine-specific demethylase ELF6 1454 1483 - -
Accr12g00601 1519 Pfam jmjN domain 26 59 IPR003349 -
Accr12g00601 1519 SUPERFAMILY Clavaminate synthase-like 164 379 - -
Accr12g00601 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1489 1513 IPR013087 -
Accr12g00601 1519 SUPERFAMILY beta-beta-alpha zinc fingers 1443 1485 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00601 Accr-Chr12 5650388 5657457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00601 1312 1517 C2H2 Transcription Factor Family AT3G48430 52.838 1.80e-64 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr12g00601 JmjC 1.6e-34 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00601 - - gmx:100775271 1855.49