Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00588 ATGGGCGGCAACGGCAGGCCCAGGTGGAAAATCTCTTTCCATCGTAATTCCTCAAGCTCCAAGCCCCAACCAAAAGACCCTCCTGTCGAGTTTCTGTGCCCAATTTCTCGGTCTCTCATAGCCGAACCAGTCGTCGTTGCTTCCGGTCAGACTTTTGAATCGGTTTCTGTTCAAGTGTGCCGAGACTTAGGTTTCACTCCCAAGCTAGAAGACGGATCCACTCCTAATTTCTCTGCTGTGATTCCAAATTTGGCTCTCAAATCCACTATATCCAATTGGTGCGTTAAATCTGGTGTGGAGAAACCTCACCCGCCGGAATATAGCTCCGTGGAGAGGATCGTCCGTACAGCAATGCCGTCCCCGCGGCGCGAGAATCAGGAGTCGGTTTCGGATAGGGAATTGCTCAAGGCCATGGTGGATAATCCACCCGTCATTTTCTCTCACGCAGCCACGGAGTTGGGTCCCCAGGCCAACCCGTTCCAAACAAGTTCATCCGACTCCGTCTGCTGTCCTGAGACTCCTTTACCTCTCGCGACTCGTCCCACCTGTTACTCGTCTTCGTCTTCTTCTGTCGAAATCAACGATAATGAACTCCGGAGCCCTATTGGTCCAATTTCCGAGGAAGAGGAGAAATTAGTGTTGAAGCTGAGGAGCGACGAAGTTTCTGAGCAGGAAGGAGCGGTTGTTTCGCTCAGGAACATCACCAAGACAAGAGAGGACACCAGAATTTCTCTTTGCACGCCTGCGTTACTCTCATCACTCCGATCACTGATCCTATCGGAGCATCCCGTTGTGCAAGTAAACGCCGTCGCCTCACTGGTTAATTTCTCCCTCGAAAAATCTAACAAAGTGAAAATCGTAAGGTCTGGATTTATCCCTTCCCTCATTGTAGTCTTGAAAAGCGGATTCCCCGAGGCGCAGGAACACGCGGCGGGAGCACTATTCAGCTTGGCCTTAGACGACGAGAACAAAATGGCCATCGGCGTTTTGGGCGCGTTGGAGCCACTCATGAACGCGTTGAGGTCCGAGTCGGAACGTGCTCGGCAGGACTCGGCGCTCGCGTTGTACCACCTGACCTTGGTGCAGAGCAACAGGGTGAAGCTGGTGAAGCTGGGGGCGGTGCCGACGCTGCTATCAATGGTGAAATCAGGGGATTTGGCGAGCCGTGTTTTGCTGATTCTGTGTAATATAGCGGCGGGAACGGAGGGGCGAACGGCGATGCTGGATGCGAATGGGGTGGAGTGCTTGGTGGGTGTACTGAGGGAGAATAAAAGTGCGGCGGAGGCGGCGACGACGGAACACTGTGTGGCGGCGTTGTACGGAATGAGCCATGGAAGCTTGAGGTTCAAAGCGTTGGCAAAGGAAGCAAGGGCTGTGGAAGTTTTGAGAGAGGTTGAAGAGAGAGGATCAGGGAGGGCACGAGAGAAAGCCAAGAGGATGTTGCAAATGATGAGAGCCGGAGGAGAAGAGGATGACGAAAACGGCGGCGGTTCTGACGAGGCATTGGACTCAAGTGGGTTGGGTCGAACCCGGTTCAGAGTTGGTGGCGGGAGGAACGTGAGCACGGCTAACACCACCTCGTTTTAG 1587 0.5369 MGGNGRPRWKISFHRNSSSSKPQPKDPPVEFLCPISRSLIAEPVVVASGQTFESVSVQVCRDLGFTPKLEDGSTPNFSAVIPNLALKSTISNWCVKSGVEKPHPPEYSSVERIVRTAMPSPRRENQESVSDRELLKAMVDNPPVIFSHAATELGPQANPFQTSSSDSVCCPETPLPLATRPTCYSSSSSSVEINDNELRSPIGPISEEEEKLVLKLRSDEVSEQEGAVVSLRNITKTREDTRISLCTPALLSSLRSLILSEHPVVQVNAVASLVNFSLEKSNKVKIVRSGFIPSLIVVLKSGFPEAQEHAAGALFSLALDDENKMAIGVLGALEPLMNALRSESERARQDSALALYHLTLVQSNRVKLVKLGAVPTLLSMVKSGDLASRVLLILCNIAAGTEGRTAMLDANGVECLVGVLRENKSAAEAATTEHCVAALYGMSHGSLRFKALAKEARAVEVLREVEERGSGRAREKAKRMLQMMRAGGEEDDENGGGSDEALDSSGLGRTRFRVGGGRNVSTANTTSF 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00588 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Accr12g00588 528 MobiDBLite consensus disorder prediction 486 528 - -
Accr12g00588 528 Gene3D - 206 483 IPR011989 -
Accr12g00588 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 327 IPR000225 GO:0005515
Accr12g00588 528 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Accr12g00588 528 PANTHER U BOX DOMAIN-CONTAINING 23 485 - -
Accr12g00588 528 Pfam Armadillo/beta-catenin-like repeat 320 359 IPR000225 GO:0005515
Accr12g00588 528 SUPERFAMILY RING/U-box 17 104 - -
Accr12g00588 528 FunFam RING-type E3 ubiquitin transferase 207 484 - -
Accr12g00588 528 Pfam U-box domain 28 95 IPR003613 GO:0004842|GO:0016567
Accr12g00588 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 412 IPR000225 GO:0005515
Accr12g00588 528 SMART arm_5 320 360 IPR000225 GO:0005515
Accr12g00588 528 SMART arm_5 400 444 IPR000225 GO:0005515
Accr12g00588 528 SMART arm_5 279 319 IPR000225 GO:0005515
Accr12g00588 528 SMART arm_5 361 399 IPR000225 GO:0005515
Accr12g00588 528 SUPERFAMILY ARM repeat 212 484 IPR016024 -
Accr12g00588 528 MobiDBLite consensus disorder prediction 1 28 - -
Accr12g00588 528 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00588 Accr-Chr12 5546471 5548057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00588 1 528 U-box Gene Family AT5G65200 54.659 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00588 - - aip:107643932 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00588 12 5546471 5548057 Accr12g00588 12 5546471 5548057 ECH