Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00585 ATGGCAACATTTGCAGGAACCACCCAGAAATGTAAGGCCTGTGAGAAGACAGTTTATTTGGTTGATCAGCTTACTGCTGACAACAAAATTTATCACAGATTTTGCTTCAGATGTCACCACTGCAAGGGAACCCTCAAGCTAAGTAATTATTGTTCCTTTGAGGGTGTTTTATACTGCAAGCCTCATTATGATCAACTCTTGAAGAAGACTGGAAGCTTAGAAAAAAGTTTTGAAGGTATTCCAAGACCTGCTAGAGTTGTCAGGTCTACTGATCAGGTACAAAGCAATGGCAAGGTTTCTAGATTATTTGTAGGAACTCAGGAAAAGTGTGTTGCTTGCCAAAAGACAGTCTACCCAATTGAAAAGGTGGCCGTTGACGGAAAATCTTACCACAAGATTTGTTTCAGATGCTCCCATGGAGGCTGTGTCATCAGCCCCTCAAACTATGTGGCCCATGAACACCGTCTCTACTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAACTTGACCGCCATGAAAATGAAACTAAACATGAAAATGATGAAAAAAAGCATGAAAACGAAATGAAACATGAAAATGAAAATGGAAATGGAATTGTTCAGGAGGTCACTGAGAACACAACAACTGAGTAA 651 0.4071 MATFAGTTQKCKACEKTVYLVDQLTADNKIYHRFCFRCHHCKGTLKLSNYCSFEGVLYCKPHYDQLLKKTGSLEKSFEGIPRPARVVRSTDQVQSNGKVSRLFVGTQEKCVACQKTVYPIEKVAVDGKSYHKICFRCSHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDRHENETKHENDEKKHENEMKHENENGNGIVQEVTENTTTE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00585 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Accr12g00585 216 CDD LIM1_SF3 7 69 - -
Accr12g00585 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Accr12g00585 216 FunFam LIM domain and actin-binding 1 5 75 - -
Accr12g00585 216 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Accr12g00585 216 SMART lim_4 10 62 IPR001781 -
Accr12g00585 216 SMART lim_4 109 161 IPR001781 -
Accr12g00585 216 Gene3D Cysteine Rich Protein 104 174 - -
Accr12g00585 216 Gene3D Cysteine Rich Protein 5 75 - -
Accr12g00585 216 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Accr12g00585 216 PANTHER OS06G0237300 PROTEIN 4 93 - -
Accr12g00585 216 FunFam LIM domain and actin-binding 1 104 174 - -
Accr12g00585 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Accr12g00585 216 CDD LIM2_SF3 110 170 - -
Accr12g00585 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Accr12g00585 216 Pfam LIM domain 11 64 IPR001781 -
Accr12g00585 216 Pfam LIM domain 110 165 IPR001781 -
Accr12g00585 216 MobiDBLite consensus disorder prediction 172 201 - -
Accr12g00585 216 Coils Coil 181 201 - -
Accr12g00585 216 MobiDBLite consensus disorder prediction 169 216 - -
Accr12g00585 216 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00585 Accr-Chr12 5517997 5520062 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Accr12g00585 LIM 2.3e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00585 K09377 - gmx:100500501 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00134 8 1817262 1819908 Accr12g00585 12 5517997 5520062 CCT
Accr12g00585 12 5517997 5520062 Accr12g00585 12 5517997 5520062 ECH