Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00577 ATGGTGCTCGAACCATACTTTAATCTATTCGATGCCATTAGAGGAGTCAATTCAAGTTCTCCTCAATCTTCTAGAGCTCTTCCAAGAGTTATGAATGATCCTAGAGTTATGTCTGATGATGATGATGATGATCCATATGATTCCTCATCAGAAGACAGGCGAAGGCTAATCGTAGTAGCAAGCTTTCTTCCTCTCAATGCTCAACAGGATGATTCTGGCAAGTGGTGCTTTAGCTACGACGAAGATTCCATTTCATTGCAACTAAAGGATGGTATATCTCATGATATTGATGTTTTTTATGTTGGATCTTTGCCTGTTCATGTTGAGAAAAGAAAACAAGAGCAAGTTTCTGTTGAGTTGCTGGAAGAATTCAAGTGCTTCCCCATATTTATTCCACCCGACACACAAAAACAGTACTATGATGGATTTTGCAAGCAGTATTTATGGCCTCTAATCCATTACATGATGCCTATGAATTCAGCTTATGGCAATCACTTTGATGAGCAACTTTGGAGAGCTTATGTGTCTGTTAATGCAAAATACACAGATAAGGTCATCGAACTTATTAATGACACAGAAGATTATGTGTGGATTCATGATTATCATCTTATGGCATTACCATTGTTTCTGCGTAGGCGCCATCATCGGTGCAAGCTAGGATTTTTCCTCCACAGTCCTTTTCCTCCTTTTGAAATTTATAAGACTCAGCCTATTGGAGTGCACATTTTGAAGGCTCTGCTTAATTCAGATTTAATAGGCTTCCAAACATTTGAATATGCTCACCACTTTTTGTCTTGCTGCAGTCAGATGCTTGGCTTGGAATATGAATTCAAAAATGGTTACATTGAGATTGAATACTTTGGCAGAAAGGTGAGCATTACAATTTTGCCTTCTGGGATTCATATGGGTCGGCTTCATTCTTCCTTAAATCACCCATCTTCTTCGGTTAAAGTCAGAGAAATCCGTGAAAAATTTAAAGGGAAAACACTCATCCTTGGTGTTGATGATTTGGATATATTCAAAGGCATTGGTCTAAAGCTCTTGGCCATAGAACAACTCCTACTAAAGAGGCCATCTTTGAGAGGCAAATTAGTTGTTGTCCAAATTTTAAATCCCCCAAAAAGAACTGGCAGAGATGTTGAGGAAGCAAATAGAGAGACATACCTCACTGCTGAAAGAATCAATGAAAAGTTTGGTTATGCCGGTTATAAACCCATCATTGTAATCAATCGTCCTACTCCTTTCTACGAGAAGGCAGCTTATTTTGCTCTGGCAGAATGTTGCATTGTGAATGCAGTGAGGGATGGTATGAACTTAGTCCCTTACATGTATATTGCTTATAGGCAGGGGACTCCAGAGATGGATGAAGTATTACATATCAATTCTGATTCGCTTCATACAAGTGCGCTTGTTGTTTCTGAGTTCATAGGTTGCTCATTATCTCTTAGTGGAGCTTTTAGGGTGAACCCTTGGGACATAAATGCTGTGGCTGAAGCACTAAGTTCAGCCATTGACATGCCTGTTAAAGAAAAACACTTGAGCCATGATATACACTTTCGACATGTTAGCTCTCGCGATGTGGCTTATTGGGCTGGAAGTTTTATGCAGAATCTTGAGCGTTCATGCATCAACCACCATGCTAGCCATTGCTTGGGCCTTGGGTTAAGTTTTAGTTTCAGAGTCATGTCATTTCCTTTGAATTATAGTAAGCTATCCATCGAGCATGTTGTCTCTGCATATGAAAAGACTAAGCATAGGGCAATATTTTTGGACTTTGATGGTACAAATGTTCCACAAACTTCCATAGTGGAAACCCCTAGTTCTGAACACATATCTGTTATTAATGACCTCTGCAATGACCTGAAGAACACCGTATTTATAGTAAGTGGCCGTGGTAAGTTCCCGTTTAGTGATTGGTTTGATTCATGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTACTTTATAAGGTGGGATAAAAATTCAAGCTGGGAAACAAGTGGTTCAGTCACTGATTTTTCTTGGAAAAGCATTGTTGAACCTGAAATGAGATCATACTCCGAATTAGCCAGTGGCAGCTATATAGAGAGAAAGGAGAGTGGCTTGGCATGGCATTATCATAAAGATGGTTGTTTTCTTTCTAATTATGGAAGTTTGAAAGCCAAGGAGCTGTTGGATCACCTTCAAAGTGTTCTTGCAAATGAGCCAGCAGTTGTTCAAAAGAGACATGATATTGTTGAAGTCAAACCACAGGGAATTACTAAAGGCATAGTCATAGAGAAGGTTCTTTCTACCCTAAAAATGAAAGGGATATCAGTGGATTTCGTGCTGTGCATCGGGGATGATGAGAATATGTTTCAAAGCATGTCAAGACAAGCTCATGGTGGAGTGTTATCTGCAGAAGCAGAAATATTTACATGCACTGTTGAAGTGAAACCAAGCAAAGCTATGTACTTTTTAAGTGATACTAATGAAGTGAAGAGTCTGCTTCAAGGCCTTGTTGCTGCTTCAGGGTCTGAATCAAAAGAAGATTATGATGAGAGGAGGGAATATTCCTCTTGA 2562 0.3946 MVLEPYFNLFDAIRGVNSSSPQSSRALPRVMNDPRVMSDDDDDDPYDSSSEDRRRLIVVASFLPLNAQQDDSGKWCFSYDEDSISLQLKDGISHDIDVFYVGSLPVHVEKRKQEQVSVELLEEFKCFPIFIPPDTQKQYYDGFCKQYLWPLIHYMMPMNSAYGNHFDEQLWRAYVSVNAKYTDKVIELINDTEDYVWIHDYHLMALPLFLRRRHHRCKLGFFLHSPFPPFEIYKTQPIGVHILKALLNSDLIGFQTFEYAHHFLSCCSQMLGLEYEFKNGYIEIEYFGRKVSITILPSGIHMGRLHSSLNHPSSSVKVREIREKFKGKTLILGVDDLDIFKGIGLKLLAIEQLLLKRPSLRGKLVVVQILNPPKRTGRDVEEANRETYLTAERINEKFGYAGYKPIIVINRPTPFYEKAAYFALAECCIVNAVRDGMNLVPYMYIAYRQGTPEMDEVLHINSDSLHTSALVVSEFIGCSLSLSGAFRVNPWDINAVAEALSSAIDMPVKEKHLSHDIHFRHVSSRDVAYWAGSFMQNLERSCINHHASHCLGLGLSFSFRVMSFPLNYSKLSIEHVVSAYEKTKHRAIFLDFDGTNVPQTSIVETPSSEHISVINDLCNDLKNTVFIVSGRGKFPFSDWFDSCENLGIAAEHGYFIRWDKNSSWETSGSVTDFSWKSIVEPEMRSYSELASGSYIERKESGLAWHYHKDGCFLSNYGSLKAKELLDHLQSVLANEPAVVQKRHDIVEVKPQGITKGIVIEKVLSTLKMKGISVDFVLCIGDDENMFQSMSRQAHGGVLSAEAEIFTCTVEVKPSKAMYFLSDTNEVKSLLQGLVAASGSESKEDYDERREYSS 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00577 853 NCBIfam trehalose-phosphatase 584 834 IPR003337 GO:0003824|GO:0005992
Accr12g00577 853 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 718 847 - -
Accr12g00577 853 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 835 IPR001830 GO:0003824|GO:0005992
Accr12g00577 853 FunFam Alpha,alpha-trehalose-phosphate synthase 308 523 - -
Accr12g00577 853 Gene3D Glycogen Phosphorylase B; 307 523 - -
Accr12g00577 853 Gene3D - 585 685 IPR023214 -
Accr12g00577 853 Gene3D - 717 850 IPR023214 -
Accr12g00577 853 CDD GT20_TPS 55 539 IPR001830 GO:0003824|GO:0005992
Accr12g00577 853 Gene3D Glycogen Phosphorylase B; 47 306 - -
Accr12g00577 853 Pfam Trehalose-phosphatase 589 823 IPR003337 GO:0003824|GO:0005992
Accr12g00577 853 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 55 541 - -
Accr12g00577 853 CDD HAD_TPP 587 826 - -
Accr12g00577 853 SUPERFAMILY HAD-like 586 833 IPR036412 -
Accr12g00577 853 NCBIfam HAD-IIB family hydrolase 587 784 IPR006379 -
Accr12g00577 853 MobiDBLite consensus disorder prediction 18 50 - -
Accr12g00577 853 FunFam Trehalose-6-phosphate synthase 8 50 307 - -
Accr12g00577 853 Pfam Glycosyltransferase family 20 55 539 IPR001830 GO:0003824|GO:0005992
Accr12g00577 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 585 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00577 Accr-Chr12 5419867 5422599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00577 21 848 Trehalose Biosynthesis Gene Families AT1G23870 57.109 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00577 K16055 - qsa:O6P43_022731 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00156 8 2156580 2159414 Accr12g00577 12 5419867 5422599 CCT
Accr12g00577 12 5419867 5422599 Accr12g00577 12 5419867 5422599 ECH