Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00576 ATGAGTAGATATGTTCCTTCTTCTTCTTCTCTGTTACTACGAACCCGTATCTCTAAATCTTTCTCCCTCAGAAAGAGGGTTCCCTGGTGGTATCAAATCCTCGATCCCAAATCCGAATTCGTCGACCAATGGAATCGCACTTTCCTCCTCGCCAGCTTCCTCGCGCTCTTTCTCGACCCTCTCTATTTCTATTTCCCCATCATCGGCAAAGAGAATTGCATGAAAATCGACTTGGTCCTCGGCGTCTTTGTCACTTTCTTCCGCACACTCATCGACATTTTCTTCGTCTTCCACATTGTTCTCAAATTCCGTACGGCCTACTTCTCTTCCCACTCTTTTGGCCGCGGTGATCTCATTACTGACCCCTACCTCATCGCCATTCGCTATCTCAAGACCGATTTCAGCTTTGATTTTCTCGCATGCCTTCCTCTCCCTCAGATTGTGATTTGGTTCATAATTCCCGCATTCAAAGGTACATCAGCAGCTCATGCGAATCACGCCCTTTCTCTCATGGTTCTTCTCCAGTTTATTCCTCGGTTCTTCCAGATTTTCCCTCTTCAGCGCCGGATTGTCAAAACCAGCGGCCTTATAGCCAAGACGGCTTTGGCAGGCTCTTTATACAACCTTGGTTTTTACGTGTTGGCCAGCCATGTATTAGGGGCTGCGTATTACTTGTTAGCTATTAATCGCCAGTCTCAATGCTGGAGAGAAACTTGTATGAAGGAAACCAACACAACGCAGTCTCCATCTTGTTCGCCTCAATTTCTTGATTGCGACTCACTGCACAATCCTGCACGGGATGCTTGGTATCAACAAACTTACCTTACTGTCACCTGTGATGCTAAGAATGAAGACAGCCACTTCGAGTTTGGAATTTACGCGGACGCTTTTACCGATGATGTTGCTAACTCTAGGTTTATCGAAAGATACTTTTATTGCCTCTGGTGGGGCTTGAAGAGTCTATGTGCATATGGACAAAATCTTGATACCAGCTCGTTCGTTTCTGAATCTTTATTTGCGAGTTTCATCTGCATTGCAGGTCTAATTCTCTTTGCACTTCTCATTGGCAACGTGCAGAACTATTGGCAATCTACTACTGCAAGACTTGAAGAGTGGAGAATTAAACAAAGAGATACGGAAGAGTGGATGAGGCATCGTCAACTTCCACCAGAACTGCAAGAACGTGTACGTCGGTTTGTCCAATACAAATGGCTAGCCACTAGAGGCGTAGATGAAGAAGCTATTTTGAATTCTTTACCATTGGACCTTCGTCGTCAGATTCAGAGACATATTTGTCTTGCTCTCGTTCGTCGGGTTCCATTTTTTGGTCAAATGGATGATCAGCTGCTAGATGCCATATGTGAACGTCTTGTGTCCTCCCTGAATACAAAAGACACATACTTAGCAAGGGAAGGAGACCCAGTAAAAGAGATGCTCTTCATCATTAGAGGACAAGTAGAGAGCTCCACCACAGATGGTGGAAGGTCTGGATTCTTCAACTCTATAACCCTAAGACCAGGTGATTTCTGTGGGGAAGAACTGCTGACGTGGGCTTTGGCCCCCAATTCTAGCAGCCTTCCATACTCCACTCGAACCGTAAAGACCCTAACTGAATTGGAAGCATTTGCACTCAGAGCTGAAGACTTGAAATTCTTTGCTACCCAATTTAAGAGGCTGCATAGCAAGAGGATTCAGCATGCTTTCAGGTATTACTCTCACCATTGGAGGACTTGGGGGGCTTCTTTTATACAAGCTGCTTGGAGACGCTATGTGAAGAAGAAGTTGGCGATGGAACTTTTGGAGAAAGAGAATCAATTAGGATTAATAGATTTGGATGGTGAAGAATCTGATTTTGGGTCAGAGAGATCCACAGGGAAAGCGGCTGCTGGTGGAAGCCTTGCCACTACACTTTTGGCTTCCAAATTTGCTAAAAACACCAGAAACGAAGCAAATAATCGGAAAGTGACAATCCCAGATGAAAGCAGCTTGAAGATGCCAAAGCTGTTTAAGCCTACTGACCCTGACTTCTCAGCAGACCACGACGATTAG 2049 0.4514 MSRYVPSSSSLLLRTRISKSFSLRKRVPWWYQILDPKSEFVDQWNRTFLLASFLALFLDPLYFYFPIIGKENCMKIDLVLGVFVTFFRTLIDIFFVFHIVLKFRTAYFSSHSFGRGDLITDPYLIAIRYLKTDFSFDFLACLPLPQIVIWFIIPAFKGTSAAHANHALSLMVLLQFIPRFFQIFPLQRRIVKTSGLIAKTALAGSLYNLGFYVLASHVLGAAYYLLAINRQSQCWRETCMKETNTTQSPSCSPQFLDCDSLHNPARDAWYQQTYLTVTCDAKNEDSHFEFGIYADAFTDDVANSRFIERYFYCLWWGLKSLCAYGQNLDTSSFVSESLFASFICIAGLILFALLIGNVQNYWQSTTARLEEWRIKQRDTEEWMRHRQLPPELQERVRRFVQYKWLATRGVDEEAILNSLPLDLRRQIQRHICLALVRRVPFFGQMDDQLLDAICERLVSSLNTKDTYLAREGDPVKEMLFIIRGQVESSTTDGGRSGFFNSITLRPGDFCGEELLTWALAPNSSSLPYSTRTVKTLTELEAFALRAEDLKFFATQFKRLHSKRIQHAFRYYSHHWRTWGASFIQAAWRRYVKKKLAMELLEKENQLGLIDLDGEESDFGSERSTGKAAAGGSLATTLLASKFAKNTRNEANNRKVTIPDESSLKMPKLFKPTDPDFSADHDD 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00576 682 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 675 - -
Accr12g00576 682 MobiDBLite consensus disorder prediction 644 658 - -
Accr12g00576 682 Pfam Ion transport protein 44 368 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Accr12g00576 682 Gene3D Helix hairpin bin 367 432 - -
Accr12g00576 682 CDD CAP_ED 441 571 IPR000595 -
Accr12g00576 682 Gene3D - 60 364 - -
Accr12g00576 682 Pfam Cyclic nucleotide-binding domain 464 550 IPR000595 -
Accr12g00576 682 SUPERFAMILY Voltage-gated potassium channels 36 363 - -
Accr12g00576 682 FunFam Cyclic nucleotide-gated ion channel 1 439 556 - -
Accr12g00576 682 Gene3D Jelly Rolls 439 558 IPR014710 -
Accr12g00576 682 FunFam Cyclic nucleotide-gated ion channel 1 368 432 - -
Accr12g00576 682 ProSiteProfiles cAMP/cGMP binding motif profile. 441 526 IPR000595 -
Accr12g00576 682 SMART cnmp_10 441 571 IPR000595 -
Accr12g00576 682 SUPERFAMILY cAMP-binding domain-like 370 565 IPR018490 -
Accr12g00576 682 MobiDBLite consensus disorder prediction 644 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00576 Accr-Chr12 5413951 5416562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00576 32 676 Ion Channels AT3G48010 63.063 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00576 K05391 - gmx:100783672 971.844