Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00574 ATGATTAATGCATCCAATCAATCCGGCCGCCGTATTCTGTCATTCCCGGCGGTTCATCCCTGCGAAAGCGTGTCTCCGGCGACCCTTCTCGCTTCTCTGATCTCTCTTTCTCAGGCTATATGCAGTTTTCAATCTAAGTTCTTCCCAACCCAACGTCGAAACTCGAGAGAAATAATTCGCCAACTCGGTATCATCCTCCTCTTCCTCGAGGAAATTCGAGATCGCGGTGTTCCGATAAGTGACGCTGTTTCTCTCTGCTTCTCCGAACTTCACCTCTGTCTCCAGAAGATTCACTTCTTACTCTCAGATTGTACTCGTGAAGGTGCTCGGCTATGGATGCTAATGAAATCGGAACATGTTGCCACTCAATTCAGGGTTCTGACTCGCGCTTTGGCCACTGCTCTTGACGTTTTGCCTCTGAGCAGCATCGAGATTTGTGACGAAGTCAAAGAGGTAGTTGAATTAGTAGCCAAGCAAGCTCAAAAGGTAAAGCTTGAACTAGACCCACACGATGAACTTACCACGAAGCAAGTCATTTCAGTTTTGTATCAGTTCGAGAGAGGAATTGAACCCAACTTGAGTATCATGAAGCGGACATTGAACTACTTGGGAATTAAAAATTGGAATGATTGCAACAGAGAGGTTAAATTCTTGGAAGATGAAGTCAACTTCAATTGCTCTGAAGGTGACGAGAGGGAAGTTCCATTTCTGAGTAGTTTAGTTGGGTATTTATGTTATTGCAGGGTAGTGATATTTGAAACTCTGGATTTTCAACAAACCGCCGCCACGGACCCGTCGGAGACAAGGTGTAGCACGGAGATGATTAACTTCATAAACCCACATGACTTCCGATGTCCTATCTCTTTACAACTAATGACCGATCCTGTGACTGTATCAACTGGTCAGACGTACGATCGATCATCCATTCAGAAATGGCTCAAAGCTGGAAACAGGACATGCCCGAAAACGGGGGAGAAGCTAACAAACACAGAGCTCGTCCCAAACACAACCCTCAGAAAGCTAATCCACCAGTTCTGTGCTGAAAACGGAGTTTCCGCCTCCACCGCCCAGTCAGGTCACCGGAGTCGCGACATAACGAGAACCATCGTCCCAGGAAGTACAGCTTCAGCACATGCCATGCAATTTCTCTCATGGTTCATTGCCGGGAGGCTTGTGTTCGGAACAGAGGAGCAGAAAAACAAAGCAACTTACGAAATTCGAGTCCTTGCAAGATCCAACATTTTCAACAGAGCATGTTTGATTGAAGTTGGGACAGTTCCTTCGTTGCTCAATCTCTTGGACACGAACGATAAATCAATGCAAGAGAACGCGATCTCTGCTCTTCTGAAACTGGCAAAGCATAATAATGGACAGACAACTATAATGGAAAGTGAAGGATTAAAACCAATCCTTATGGTTCTCAAGAATGGAATTTCTTTAGAAGCTCGTCAAACCGCAGCTGCGATAATATTCTACCTTTCTTCCACGAGAGAGAACAGGAAAGTGATCGGAGAAAACGCAGAAGCAATCCCTGCTTTGGTAGAACTAATCAACGAAGAAACAGCAGCATTTGGGAAAAAGAACGCAATAGTCGCCATTTTCGGGCTTCTCTTGCTTCCTCAGAATCATCACAAAGTGATTGAAGCCAATACTGTTCCGGCGCTGGTTAGTATCTTAGCTTCGTCGTCGTCGCAAAAGTCCGACCTGACCACAGATTGTTTAGCGGTTCTTGCGGCGTTAGCGGAGAACGAGGAGGGAGCAAAAGCTGTGTCAAAAGCTTGTGGTTTGTCATTGATCGTTGGGTTGTTGCAGATGGTGACATGGAGGACAGGGAAAGAACACTGTGTGTCAATTTTGATGTCGCTGTCTGTTCACGTTGGAGAAGAAGTGGTGGCTGTTCTGGCGAAAGATCCGACGTTGATGCCGTGGCTTTACTCACTGCTCACTGACGGAACTTGTCATGCGGCTAAGAAGGCTCGTTCTCTCATCAAACTTCTTCATGAATTCAATGACACTAGAACTTCTCAGTGGGTTACTTCTTCGGTCGTGCCACAACGATCCCTTCACATTTGGTGA 2076 0.46 MINASNQSGRRILSFPAVHPCESVSPATLLASLISLSQAICSFQSKFFPTQRRNSREIIRQLGIILLFLEEIRDRGVPISDAVSLCFSELHLCLQKIHFLLSDCTREGARLWMLMKSEHVATQFRVLTRALATALDVLPLSSIEICDEVKEVVELVAKQAQKVKLELDPHDELTTKQVISVLYQFERGIEPNLSIMKRTLNYLGIKNWNDCNREVKFLEDEVNFNCSEGDEREVPFLSSLVGYLCYCRVVIFETLDFQQTAATDPSETRCSTEMINFINPHDFRCPISLQLMTDPVTVSTGQTYDRSSIQKWLKAGNRTCPKTGEKLTNTELVPNTTLRKLIHQFCAENGVSASTAQSGHRSRDITRTIVPGSTASAHAMQFLSWFIAGRLVFGTEEQKNKATYEIRVLARSNIFNRACLIEVGTVPSLLNLLDTNDKSMQENAISALLKLAKHNNGQTTIMESEGLKPILMVLKNGISLEARQTAAAIIFYLSSTRENRKVIGENAEAIPALVELINEETAAFGKKNAIVAIFGLLLLPQNHHKVIEANTVPALVSILASSSSQKSDLTTDCLAVLAALAENEEGAKAVSKACGLSLIVGLLQMVTWRTGKEHCVSILMSLSVHVGEEVVAVLAKDPTLMPWLYSLLTDGTCHAAKKARSLIKLLHEFNDTRTSQWVTSSVVPQRSLHIW 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00574 691 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Accr12g00574 691 FunFam RING-type E3 ubiquitin transferase 361 677 - -
Accr12g00574 691 SUPERFAMILY RING/U-box 280 351 - -
Accr12g00574 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 595 IPR000225 GO:0005515
Accr12g00574 691 CDD RING-Ubox_PUB 280 332 IPR045210 -
Accr12g00574 691 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Accr12g00574 691 SMART arm_5 412 453 IPR000225 GO:0005515
Accr12g00574 691 SMART arm_5 539 582 IPR000225 GO:0005515
Accr12g00574 691 SMART arm_5 455 495 IPR000225 GO:0005515
Accr12g00574 691 Gene3D - 366 682 IPR011989 -
Accr12g00574 691 FunFam RING-type E3 ubiquitin transferase 278 353 - -
Accr12g00574 691 PANTHER U BOX DOMAIN-CONTAINING 78 666 - -
Accr12g00574 691 SUPERFAMILY ARM repeat 396 667 IPR016024 -
Accr12g00574 691 Gene3D - 29 143 IPR036537 GO:0007166
Accr12g00574 691 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Accr12g00574 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 354 IPR013083 -
Accr12g00574 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Accr12g00574 691 Pfam Armadillo/beta-catenin-like repeat 416 452 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00574 Accr-Chr12 5403460 5405535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00574 1 691 U-box Gene Family AT1G60190 38.659 8.45e-169 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00574 - - cit:102613373 851.662