Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00572 ATGAACGAGTTTTTCATTGCCCTGATTCTCCTCTTTCTGGGTATTGTCGCTTTGGTGTTGATCCACGTGTGCGTTGTCGGGAGAGCTCTGAGCAGAGGAAATAATCATCAGGGTGAGAATGAAGAACAGAGCAATGGCGATTTTGATGGGATTAGGACGAAGAGAATGTCAATTCAGGAGATGAAGGATCTCCCCTGTTTTGAGTATGAGGAAACAGAGAAGAAAGGAGGAGTTAGTAGCAGCAGAGTCACTGTGGATTGTGCAGTTTGCTTAGAAAGCTTCAAGGATGGTGATGTGTGCAGGCTCTTACCAAATTGCTCACATAGCTTCCATGTCTCTTGCATAGATTCGTGGATTCTCAAAACACCCATTTGTCCAATTTGCAGAACCTGGGTTCATTCGCCAATCATTCCCAAGCTTAATGTTACCCAACAGGCTGATGCTTCACAAAATGGTGTGATTGAGATTGTATAG 474 0.4409 MNEFFIALILLFLGIVALVLIHVCVVGRALSRGNNHQGENEEQSNGDFDGIRTKRMSIQEMKDLPCFEYEETEKKGGVSSSRVTVDCAVCLESFKDGDVCRLLPNCSHSFHVSCIDSWILKTPICPICRTWVHSPIIPKLNVTQQADASQNGVIEIV 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00572 157 SUPERFAMILY RING/U-box 58 135 - -
Accr12g00572 157 FunFam RING-H2 finger protein ATL2K 56 135 - -
Accr12g00572 157 Pfam Ring finger domain 86 129 IPR001841 -
Accr12g00572 157 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Accr12g00572 157 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 136 - -
Accr12g00572 157 SMART ring_2 87 128 IPR001841 -
Accr12g00572 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 135 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00572 Accr-Chr12 5399450 5399923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00572 56 133 C3H Transcription Factor Family AT2G18670 41.026 6.67e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00572 - - gmx:102662620 163.696