Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00568 ATGGCTATCAGAGGCGTTGATTTTAAGTGGTACGATGGGTTTTTCTTGTCGATGCTCGCTACCAGTGTAGCTATTGTCGAGATTAATTGGAAGCGGTATCATGCCTGTACACACCCTTTACACATATGGATTGTGGTCGACTACTCTACTGTGTTTATCTTTCGGTTGATGATGTTTGTTGATAATGGACTTTCGGCGGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGATATGCTCGCTTCTGTGGAAGAATAGTGGTCCTTTCAATCCTTGCTTTGCTTCTATATCCATTTCTCTGGGCTTGGACTATCATTGGTACCCTCTGGTTCACTAGTGCAAGGAACTGCTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTCAGCTACTGTGGACTGCTTTGCGTTGCTTGCTTGTCGTTAGGCAAGTGGTTGAACCGAAGACAAGCTCATTTATTACGTGCTCAGCAGGGTATTCCTGTGTCTGAATATGGAGTTCTGGTGGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAGGAAACTAGAGGTATGGGCCAAGATGCTGGGGCATATCATCCTGGACTTTATCTAACCCCAGCTCAGAGAGAAGCAGTAGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCTACTGACTGTAGTGAATGCCCTATCTGCTTAGAAGAATTCCACGAGGGAAACGAGGTCCGTGGCTTGCCTTGCGCTCATAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGCCTTAATGTAAAATGTCCTCGGTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCTCTGTCCAATCTTCGTCCTGAGTCAGAACGATCTTCTGCCAGTGTTGTGACAACAACAAGATATGTGAGAGGTCAACCTTCAAGTCAGAGTTATTTGTTGAGATTACAGGGTCTTCTCCGTCCAGTGCGTTCAGAAATTGCTGGGCCGGTTGATGAGGTGGGAAATGCTTTGGAAAATGCAGAGAACGGTAGTGTGCCTGAAGAAGTACGAAATGGATCAATTAGAGACCAAGGTCCTTCAGTCGAATGTATGCCTGTCAGTCTCTCCTGTGCTCAAAACTAG 1143 0.4611 MAIRGVDFKWYDGFFLSMLATSVAIVEINWKRYHACTHPLHIWIVVDYSTVFIFRLMMFVDNGLSAGMGLDFGWQQRYARFCGRIVVLSILALLLYPFLWAWTIIGTLWFTSARNCLPEEGQKWGFLIWLLFSYCGLLCVACLSLGKWLNRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRSEIAGPVDEVGNALENAENGSVPEEVRNGSIRDQGPSVECMPVSLSCAQN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00568 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Accr12g00568 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Accr12g00568 380 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Accr12g00568 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 IPR044793 GO:0004842|GO:0010182
Accr12g00568 380 SMART ring_2 235 275 IPR001841 -
Accr12g00568 380 SUPERFAMILY RING/U-box 217 284 - -
Accr12g00568 380 Pfam Ring finger domain 234 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00568 Accr-Chr12 5346401 5349961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00568 58 353 C3H Transcription Factor Family AT3G47990 73.913 1.72e-159 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00568 K16284 - gmx:100812016 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00568 12 5346401 5349961 Accr12g00568 12 5346401 5349961 ECH