Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00564 ATGAAGAACTTTCACAGCTTCAAACTGATTTCAACCCCAAAAAGACCAGGAAGGAGGCTTTCACTTGGGGAATACAAGCGAGCAGTGTCATGGTCCAAGTACTTAGTCTCTTCAGGGGCTGCCATTAAAGGAGAAGGAGAAGAAGAATGGAGTGCTGATCTGTCTCAGCTGTTCATTGGATCCAAATTTGCTTTTGGAAGACACAGTAAACTCTACAGAGGAGTTTACAATCATAAAGATGTGGCCATCAAGCTCATAAGCCAACCTGAGGAAGATGCAGACTTGGCTGCTTTGCTTGAAAAACAATTCACTTCTGAAGTTGCCCTTCTCTTTCGTTTGCACCATCCAAATATCATCACTTTTTTTGCTGCTTGCAAGAAGCCTCCTGTGTTTTGTATAATTACTGAGTATATGGCTGGAGGATCACTGAGAAGTTATCTGCATCAGCAAAGGCCAAATTCAGTTCCACTTAATCTGGTTCTGAAATTAGCACTAGACATTGCAAAAGGGATGCAGTATCTTCATTCTGAGGGTGTGCTTCATAGGGATCTTAAATCAGAGAACTTGTTGCTTGGGGAAGATATGTGTGTGAAAGTAGCAGATTTTGGAATCTCTTGCTTAGAATCACAGATTGGTAGTGCAAAAGGATTCACAGGAACTTACCGTTGGATGGCTCCTGAGATGATCAAAGAAAAGCATCATTCTAAGAAAGTAGATGTCTATAGCTTTGCCATAGTTCTATGGGAGCTTTTAACTGGACTAACTCCATTTCACAACATGACACCAGAACAAGCAGCTTTTGCAGTCTCAATCAAGAATGCAAGGCCACCATTACCAGCTGATTGTCCAAAGGCATTTAGTCATCTCATAAACAGATGCTGGTCAAGCAATCCAGATAAAAGGCCACATTTTGGTGAGATTGTTTCTATTTTGGAGAGGTATAGTGAATCCCTTGAAGAAGATCCTGAGTTCTTCTCAACTTATGAACCACTACCACCTTCTTCTTTTGTGATGAGACTCTTGCCAAAATGTATTACTAGTAGTCATAGATGTTCTTGA 1059 0.4089 MKNFHSFKLISTPKRPGRRLSLGEYKRAVSWSKYLVSSGAAIKGEGEEEWSADLSQLFIGSKFAFGRHSKLYRGVYNHKDVAIKLISQPEEDADLAALLEKQFTSEVALLFRLHHPNIITFFAACKKPPVFCIITEYMAGGSLRSYLHQQRPNSVPLNLVLKLALDIAKGMQYLHSEGVLHRDLKSENLLLGEDMCVKVADFGISCLESQIGSAKGFTGTYRWMAPEMIKEKHHSKKVDVYSFAIVLWELLTGLTPFHNMTPEQAAFAVSIKNARPPLPADCPKAFSHLINRCWSSNPDKRPHFGEIVSILERYSESLEEDPEFFSTYEPLPPSSFVMRLLPKCITSSHRCS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00564 352 ProSiteProfiles Protein kinase domain profile. 57 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00564 352 CDD STKc_MAP3K-like 59 311 - -
Accr12g00564 352 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Accr12g00564 352 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Accr12g00564 352 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Accr12g00564 352 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Accr12g00564 352 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Accr12g00564 352 Gene3D Transferase(Phosphotransferase) domain 1 140 329 - -
Accr12g00564 352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 53 316 - -
Accr12g00564 352 Pfam Protein tyrosine and serine/threonine kinase 62 311 IPR001245 GO:0004672|GO:0006468
Accr12g00564 352 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Accr12g00564 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Accr12g00564 352 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00564 352 SUPERFAMILY Protein kinase-like (PK-like) 48 338 IPR011009 -
Accr12g00564 352 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00564 Accr-Chr12 5322439 5324824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00564 30 346 MAP Kinase Kinase Kinase AT1G62400 59.190 1.65e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Accr12g00564 PK_Tyr_Ser-Thr 7.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00564 - - tcc:18603894 589.341