Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00562 ATGGAAGGTGGACATGAGTATAAGAAACGGCTCTGGAATTCTCAGGAAGACAAGATCTTAATGGACTACGTTAAGCAGCATGGCGTAGGCAAATGGAACCGTATCGCTAAACTCACAGGATTGAAGAGATGTGGGAAAAGTTGCAGACTGAGGTGGATGAACTACCTGAGTCCGAACGTGAAGCGTGGAGATTTCTCAGAAGAAGAAGACGACCTCATTATTCGCCTGCACAATCTCCTTGGAAACCGGTGGTCATTGATAGCAGGGAGGGTACCTGGTAGGACAGACAACCAAGTGAAGAACTACTGGAACACTCATTTGAGCAGAAAGTTGGGTGTTAATAAGAAGGGAAAGAACAAGGCATGTCAACCTTCGAAGCCACCCTCTAGTGAATCAAACGACAACATAGAGTCAAATCCTTTGAAGGGAGCTTCAGACGGTAGGCAAGATAAAGAGGAATTCAGGAGCATGAAGGAGATCATTATGATTGATGATGATTTTGAGTCCAACTTTTTGTTTGCTAACAATGGAGTTGACCTCTTTGATCCTTCCTCCTTCAGATCAGAGCCTTTCCAAGACTACTTTGTTGACTTTGATTGGGCTGCCGTGTAA 612 0.4444 MEGGHEYKKRLWNSQEDKILMDYVKQHGVGKWNRIAKLTGLKRCGKSCRLRWMNYLSPNVKRGDFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNYWNTHLSRKLGVNKKGKNKACQPSKPPSSESNDNIESNPLKGASDGRQDKEEFRSMKEIIMIDDDFESNFLFANNGVDLFDPSSFRSEPFQDYFVDFDWAAV 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00562 203 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 136 - -
Accr12g00562 203 MobiDBLite consensus disorder prediction 114 150 - -
Accr12g00562 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Accr12g00562 203 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Accr12g00562 203 Pfam Myb-like DNA-binding domain 11 56 IPR001005 -
Accr12g00562 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Accr12g00562 203 SMART sant 61 109 IPR001005 -
Accr12g00562 203 SMART sant 8 58 IPR001005 -
Accr12g00562 203 FunFam Transcription factor WER 63 135 - -
Accr12g00562 203 Gene3D - 63 138 - -
Accr12g00562 203 CDD SANT 12 56 IPR001005 -
Accr12g00562 203 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Accr12g00562 203 CDD SANT 65 107 IPR001005 -
Accr12g00562 203 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Accr12g00562 203 MobiDBLite consensus disorder prediction 123 142 - -
Accr12g00562 203 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Accr12g00562 203 Gene3D - 9 61 - -
Accr12g00562 203 FunFam MYB-related transcription factor 8 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00562 Accr-Chr12 5291410 5292363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00562 5 129 MYB Transcription Factor Family AT5G40330 74.803 1.80e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr12g00562 Myb_DNA-binding 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00562 K09422 - zju:107418407 243.047