Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00547 ATGGGTTTTCCTTCTCTTCACGTCTGCATGGAATCATCAGATCACTGGCTCCAGGGCACAATTCACGAGGAATCTGGTGGATTGGATTCATCTTCACCATCAGGAGACATGCTTACATGCTCAAGGCCATTAATAGAGAGGAGGCTAAGACCACCACATGATCAAGCCATCATAAAGTGCCCTAGATGTGACTCCACACATACCAAGTTCTGCTACTACAACAATTACAGCCTCTCCCAGCCAAGGTACTTCTGCAAGACTTGCAGAAGGTACTGGACCAAAGGTGGTACTCTCAGGAACATCCCTGTTGGTGGAGGTTGCAGAAAGAATAAGAAAGTATCCAAGAAATCCAACAACAATAATGATCCATCACACAATAATAACCAAAACCACCAGCCATTATTGTTACAGCCTGCTTCAGGAATAGCCACCTCTTATCACCCTAAAGACCACCTTCAACTTTCTTTCCCAGATGCTGCACAGTTTTCTCACATTGGTAATTTAATGGGAAACCCTAATTTCATGCTTGAGAGTAACCCTAGGCCTATTGACTTCATGGACAGTAAGCTGGAAGGGATAATTGGGAGTACTTCTTCTAGAAACTTCCATTTTCTGGGAAACAGTGACATGGGTATGGGAATTGGAGCTGGAGACATTAATGGTCATCATCACAATGGGTTGACGCCAAATTTTCACACTCTTTGCTCTCCATCAGGATTTATGGGTATTTCATCATCTTTTGATGGTAATAACAACAATAATAGTGGGACTAATTATAATATCATGGACTCTTCTTGCCAGAGACTGATGCTGCCATATAATGAGGACCCAAATGATGCCACCATTGATGTGAAACCAAACCCTAAGCTTTTGTCTCTTGAGTGGCAGGACCAGGCTTGCTTCGATGCTGGAAAAGAGTCGTCGTCGTCGTCGTTTGGGTATCTTAACGGTCTAGGATCATGGACCGGCATGATCAACGGCTACGGTTCATCCACGACGACAAACCCTTTGGTCTAA 1017 0.4395 MGFPSLHVCMESSDHWLQGTIHEESGGLDSSSPSGDMLTCSRPLIERRLRPPHDQAIIKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSKKSNNNNDPSHNNNQNHQPLLLQPASGIATSYHPKDHLQLSFPDAAQFSHIGNLMGNPNFMLESNPRPIDFMDSKLEGIIGSTSSRNFHFLGNSDMGMGIGAGDINGHHHNGLTPNFHTLCSPSGFMGISSSFDGNNNNNSGTNYNIMDSSCQRLMLPYNEDPNDATIDVKPNPKLLSLEWQDQACFDAGKESSSSSFGYLNGLGSWTGMINGYGSSTTTNPLV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00547 338 Pfam Dof domain, zinc finger 57 112 IPR003851 GO:0003677|GO:0006355
Accr12g00547 338 ProSiteProfiles Zinc finger Dof-type profile. 58 112 IPR003851 GO:0003677|GO:0006355
Accr12g00547 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 47 215 IPR045174 GO:0003700|GO:0006355
Accr12g00547 338 ProSitePatterns Zinc finger Dof-type signature. 60 96 IPR003851 GO:0003677|GO:0006355
Accr12g00547 338 MobiDBLite consensus disorder prediction 103 133 - -
Accr12g00547 338 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00547 Accr-Chr12 5116160 5117666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00547 1 338 C2C2-Dof Transcription Factor Family AT5G62940 43.797 1.06e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr12g00547 zf-Dof 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00547 - - gmx:100806697 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00172 8 2458344 2459590 Accr12g00547 12 5116160 5117666 CCT