Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00543 ATGGATCTTCACGCAAATCTCAGAGATAACTCTTGCACCTCACAGCCAATAATGCATAATCTTCAAGAAACTTACCTGAGGCCTAATATGAAATTAGATGAATCTCCTTTTGGGGTTCCTAATTCATCATCACAGGGTTTCTTGCAAGATTTTAATTACCACCTTGATGATGATCATCATCATAATCAGTTTCACCTTGATGGTTCTTCTTCATCAAACCCAGTTGCTGCTTTTGGGATGATCCGTACTTTGAGTTTTGATTCTTTTGATAATTTTGATGTTTATGAGTGCAAGCCGTTTGTTGTTGATGAGATCAATAATAATGTGCAACATGCTCAGGTTTTGGATAATTTCCAATATGAAGCTAATAATTATTGCAGCTTGAACGTGCCGGGTCAGAGAAATCACCAAGTCAACATGAACCATCAAACCTATGTGCCTTTCAATAATAATTCTCAGGAAATTATAAAGCCTGTGAATTTTGTTGTGCCAGATGAACTCTCCTGCATATCTCCTTCTATGAATTATTACAGAAAAGTTGGCTTCAATAAGAAAAGTAATAGGCTATCTTCCACTACAAGGACTAGTAATTACAGACTTCGCAAGAAATCCAACGCTGTAAAGGGCCAATGGACTATAGAAGAAGATAGGTTGTTGATTCAATTGGTGGAACAATATGGAGTGAGAAAGTGGTCTCATATTGCTCAGATGTTGCCAGGAAGAATAGGAAAACAGTGCAGAGAAAGATGGCATAATCATCTAAGACCTGACATAAAGAAGGAGACATGGACAGAAGAAGAAGACAAGGTACTGATAGAAGCTCATGGAGAGATAGGAAACAAATGGGCAGAGATAGCAAAGAGATTGCCAGGAAGAACAGAAAACTCCATTAAGAACCATTGGAATGCCACAAAGAGAAGGCAATACTCTAAGAGAAAATGTCGCTCTAAGAACCCTAAACCCTCTCTTTTACAAGCTTATATCAAAAGCTTGAACTTAGACCAAAACCCACCATTAGACTATCGCAAAAAATCTTCTTCTTCTAATAATAACAACACTGTCACAATCACAAACAAATCTGAAGCATCTCACTCTCATCATCAGTTACCAGATGATAGAATATTTATGCCGAATAATTATGGGTTTAAGGAGGCCCTACATTTTTGCTTTGACGAGAGCTTGCTTCGAGAAGATGATGATGATCTGGTTGGTGACAAGTTTGAAGAGAAAATGGCAACAATGGTGGAGTTTGAAGAGAAGAAGAAGGAGCTGGATTTGGTGGAGATGATGTCTCAGGTCAACGACGCTATTATTGATATGTAA 1323 0.3794 MDLHANLRDNSCTSQPIMHNLQETYLRPNMKLDESPFGVPNSSSQGFLQDFNYHLDDDHHHNQFHLDGSSSSNPVAAFGMIRTLSFDSFDNFDVYECKPFVVDEINNNVQHAQVLDNFQYEANNYCSLNVPGQRNHQVNMNHQTYVPFNNNSQEIIKPVNFVVPDELSCISPSMNYYRKVGFNKKSNRLSSTTRTSNYRLRKKSNAVKGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKETWTEEEDKVLIEAHGEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKNPKPSLLQAYIKSLNLDQNPPLDYRKKSSSSNNNNTVTITNKSEASHSHHQLPDDRIFMPNNYGFKEALHFCFDESLLREDDDDLVGDKFEEKMATMVEFEEKKKELDLVEMMSQVNDAIIDM 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00543 440 Gene3D - 207 259 - -
Accr12g00543 440 CDD SANT 262 305 IPR001005 -
Accr12g00543 440 PANTHER MYB PROTEIN-RELATED 184 353 - -
Accr12g00543 440 FunFam Transcriptional activator Myb isoform A 207 260 - -
Accr12g00543 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 258 IPR017930 -
Accr12g00543 440 CDD SANT 211 254 IPR001005 -
Accr12g00543 440 MobiDBLite consensus disorder prediction 304 318 - -
Accr12g00543 440 MobiDBLite consensus disorder prediction 334 369 - -
Accr12g00543 440 ProSiteProfiles Myb-like domain profile. 203 254 IPR001005 -
Accr12g00543 440 SUPERFAMILY Homeodomain-like 206 301 IPR009057 -
Accr12g00543 440 Pfam Myb-like DNA-binding domain 211 269 - -
Accr12g00543 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 309 IPR017930 -
Accr12g00543 440 Gene3D - 261 326 - -
Accr12g00543 440 FunFam Transcription factor MYB119 261 325 - -
Accr12g00543 440 ProSiteProfiles Myb-like domain profile. 255 305 IPR001005 -
Accr12g00543 440 SMART sant 207 256 IPR001005 -
Accr12g00543 440 SMART sant 259 307 IPR001005 -
Accr12g00543 440 MobiDBLite consensus disorder prediction 296 318 - -
Accr12g00543 440 MobiDBLite consensus disorder prediction 339 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00543 Accr-Chr12 5059685 5061567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00543 93 395 MYB Transcription Factor Family AT4G18770 52.484 5.47e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr12g00543 Myb_DNA-bind_6 3.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00543 K09422 - gmx:100816653 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00543 12 5059685 5061567 Accr12g00543 12 5059685 5061567 ECH