Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00542 ATGGCTCTTGAAACGCTGAAGCTGTCTCTTACCCTCAATAACATTTCTGTTACTGTTTCTGCCATGGATCTTCACGCAAATCTCAGAGATAACTCTTGCACCTCACAGCCAATAATGCATAATCTTCAAGAAACTTACCTGAGGCCTAATATGAAATTAGATGAATCTCCTTTTGGGGTTCCTAATTCATCATCACAGGGTTTCTTGCAAGATTTTAATTACCACCTTGATGATGATCATCATCATAATCAGTTTCACCTTGATGGTTCTTCTTCATCAAACCCAGTTGCTGCTTTTGGGATGATCCGTACTTTGAGTTTTGATTCTTTTGATAATTTTGATGTTTATGAGTGCAAGCCGTTTGTTGTTGATGAGATCAATAATAATGTGCAACATGCTCAGGTTTTGGATAATTTCCAATATGAAGCTAATAATTATTGCAGCTTGAACGTGCCGGGTCAGAGAAATCACCAAGTCAACATGAACCATCAAACCTATGTGCCTTTCAATAATAATTCTCAGGAAATTATAAAGCCTGTGAATTTTGTTGTGCCAGATGAACTCTCCTGCATATCTCCTTCTATGAATTATTACAGAAAAGTTGGCTTCAATAAGAAAAGTAATAGGCTATCTTCCACTACAAGGACTAGTAATTACAGACTTCGCAAGAAATCCAACGCTGTAAAGGGCCAATGGACTATAGAAGAAGATAGGTTGTTGATTCAATTGGTGGAACAATATGGAGTGAGAAAGTGGTCTCATATTGCTCAGATGTTGCCAGGAAGAATAGGAAAACAGTGCAGAGAAAGATGGCATAATCATCTAAGACCTGACATAAAGAAGGAGACATGGACAGAAGAAGAAGACAAGGTACTGATAGAAGCTCATGGAGAGATAGGAAACAAATGGGCAGAGATAGCAAAGAGATTGCCAGGAAGAACAGAAAACTCCATTAAGAACCATTGGAATGCCACAAAGAGAAGGCAATACTCTAAGAGAAAATGTCGCTCTAAGAACCCTAAACCCTCTCTTTTACAAGCTTATATCAAAAGCTTGAACTTAGACCAAAACCCACCATTAGACTATCGCAAAAAATCTTCTTCTTCTAATAATAACAACACTGTCACAATCACAAACAAATCTGAAGCATCTCACTCTCATCATCAGTTACCAGATGATAGAATATTTATGCCGAATAATTATGGGTTTAAGGAGGCCCTACATTTTTGCTTTGACGAGAGCTTGCTTCGAGAAGATGATGATGATCTGGTTGGTGACAAGTTTGAAGAGAAAATGGCAACAATGGTGGAGTTTGAAGAGAAGAAGAAGGAGCTGGATTTGGTGGAGATGATGTCTCAGGTCAACGACGCTATTATTGATATGTAA 1386 0.3817 MALETLKLSLTLNNISVTVSAMDLHANLRDNSCTSQPIMHNLQETYLRPNMKLDESPFGVPNSSSQGFLQDFNYHLDDDHHHNQFHLDGSSSSNPVAAFGMIRTLSFDSFDNFDVYECKPFVVDEINNNVQHAQVLDNFQYEANNYCSLNVPGQRNHQVNMNHQTYVPFNNNSQEIIKPVNFVVPDELSCISPSMNYYRKVGFNKKSNRLSSTTRTSNYRLRKKSNAVKGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKETWTEEEDKVLIEAHGEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKNPKPSLLQAYIKSLNLDQNPPLDYRKKSSSSNNNNTVTITNKSEASHSHHQLPDDRIFMPNNYGFKEALHFCFDESLLREDDDDLVGDKFEEKMATMVEFEEKKKELDLVEMMSQVNDAIIDM 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00542 461 FunFam Transcription factor MYB119 282 346 - -
Accr12g00542 461 ProSiteProfiles Myb-like domain profile. 276 326 IPR001005 -
Accr12g00542 461 CDD SANT 283 326 IPR001005 -
Accr12g00542 461 Gene3D - 282 347 - -
Accr12g00542 461 Gene3D - 228 280 - -
Accr12g00542 461 MobiDBLite consensus disorder prediction 360 384 - -
Accr12g00542 461 ProSiteProfiles Myb-like domain profile. 224 275 IPR001005 -
Accr12g00542 461 MobiDBLite consensus disorder prediction 317 339 - -
Accr12g00542 461 SMART sant 228 277 IPR001005 -
Accr12g00542 461 SMART sant 280 328 IPR001005 -
Accr12g00542 461 MobiDBLite consensus disorder prediction 325 339 - -
Accr12g00542 461 CDD SANT 232 275 IPR001005 -
Accr12g00542 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 280 330 IPR017930 -
Accr12g00542 461 MobiDBLite consensus disorder prediction 355 387 - -
Accr12g00542 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 279 IPR017930 -
Accr12g00542 461 PANTHER MYB PROTEIN-RELATED 204 374 - -
Accr12g00542 461 Pfam Myb-like DNA-binding domain 232 290 - -
Accr12g00542 461 FunFam Transcriptional activator Myb isoform A 228 281 - -
Accr12g00542 461 SUPERFAMILY Homeodomain-like 227 322 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00542 Accr-Chr12 5059622 5061567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00542 114 416 MYB Transcription Factor Family AT4G18770 52.484 4.65e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr12g00542 Myb_DNA-bind_6 3.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00542 K09422 - gmx:100816653 421.394