Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00522 ATGGATATCAACAAAGGAGGACAAGTTGAGAAGGTGAATGGAAAAGAATTGACTTATGGCGAATTTGTGAACCGGTACATGGAGAAGAACTGTCCAGTGGTGCTCACAGGACTCATGGACGATTGGAGGGCTTGCAAGGACTGGGTCACCGTTAATGGCCAACCCAACCTTCAGTTTTTTTCTTCCCATTTTGGGAGTTCTAAAGTTCAGGTTGCAGATTGTGGCACTAGAGAATTCACGGATCAGAAAAGGGAGGAGATGCGTGTTTCAGATTTTATAAGCCGTTGGCTAGAGGGTTCTCCAGTACAGCCTAATACTGAAAATCATGATAGTAATGGTCATGGCTCCGTACTGTATTTGAAGGACTGGCACTTTGTAAAGGAGTATCCAGAATATTTAGCATACATCACTCCAGTGTTCTTCCGTGATGACTGGCTCAACTTTTATCTTGACTACTACAAAATGCATACAGATCCTGATAGTTACCAACAAAATAGTGAAATATGTTGCTCTGACTATCGTTTTGTTTACATGGGGGCAAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGTTGGTCTGCAAATGTCTGTGGGAAGAAGAGATGGCTTTTTCTAGCTCCTCAGCAGAGTCATCTTGTATTTGACAGGAATGTGAAAAGTTGTGTGTATGATATCCTTGCTGAAGTAAGTGAATCAAAATTTCCTGGCTTTAAAAAGACTATCTGGTTAGAATGCACGCAAGAGGCGGGTGAAATCATTTTTGTTCCGAGTGGATGGTATCATCAAGTTCATAATCTGGAGGATGCTATATCTATAAACCACAACTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTGAGGGACTACAATGAGGCCAAGGAATACATTGAGGACATCAAGGATATATGCGATGATTTTGAGGGTCTCTGCCAGCGCAATCTTTTTGCTAACACAGGGATGAACTTTTATGACTTCTTTACTCTCATAACGTGCTTCACCCTGGCCAACATAGCGTTGCTTTGCTATCTAAGTGGAAAATATGGAAGCCCCCCTGAAAGCTCACTTACAATCACTCAACATGTAATTTTCAATCTCGGATCGGTGAGGAAGGTTGCAATGGAGATGAAAAGCATGCATGCCCTTGAAGGAAATCATCACTGCTTCCTGGACATTTTCAAAACATCTGAAGATACTAGGTTCTTTGAGTTGTGCACGCATTTAAGAAAAACATATGTGACGATACACGAGCAACCTTATTTGTCTTCTGAATTCGAGAAATCTGCAGTTGATTATCTAATGGGCTTAAAAGCATGTTCTTCTTCTCGGATCCACACACCTGAAGACCTAACCAAACTTATAGACAATGCTGTTTCAGAACTTGGTGACAATTACACTCAGCAACTGTCTGCAGTGCATGTCACTTGA 1452 0.4132 MDINKGGQVEKVNGKELTYGEFVNRYMEKNCPVVLTGLMDDWRACKDWVTVNGQPNLQFFSSHFGSSKVQVADCGTREFTDQKREEMRVSDFISRWLEGSPVQPNTENHDSNGHGSVLYLKDWHFVKEYPEYLAYITPVFFRDDWLNFYLDYYKMHTDPDSYQQNSEICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKRWLFLAPQQSHLVFDRNVKSCVYDILAEVSESKFPGFKKTIWLECTQEAGEIIFVPSGWYHQVHNLEDAISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLFANTGMNFYDFFTLITCFTLANIALLCYLSGKYGSPPESSLTITQHVIFNLGSVRKVAMEMKSMHALEGNHHCFLDIFKTSEDTRFFELCTHLRKTYVTIHEQPYLSSEFEKSAVDYLMGLKACSSSRIHTPEDLTKLIDNAVSELGDNYTQQLSAVHVT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00522 483 FunFam JmjC domain-containing protein 4 3 283 - -
Accr12g00522 483 ProSiteProfiles JmjC domain profile. 126 298 IPR003347 -
Accr12g00522 483 SMART cupin_9 118 298 IPR003347 -
Accr12g00522 483 Gene3D Cupin 2 283 - -
Accr12g00522 483 Pfam Cupin-like domain 21 281 IPR041667 -
Accr12g00522 483 SUPERFAMILY Clavaminate synthase-like 8 310 - -
Accr12g00522 483 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00522 Accr-Chr12 4880629 4884271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00522 7 290 Glycosyltransferase AT1G78280 25.685 7.51e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Accr12g00522 Cupin_8 2.1e-25 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00522 - - gsj:114409851 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00522 12 4880629 4884271 Accr12g00522 12 4880629 4884271 ECH