Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00521 ATGCCTGTAAATCCATGGACCCTCTTCTTCCTCTGTTTTTCTCTTTCACTTCTTCGTCATTCTTTTATAGCTTTTGCAGTAAACTCGCAAGGAGAAGCTCTTCTTTCATGGAAGAGAACCCTCAAGGGATCACTGGAGGTGTTGAGCAATTGGAATCCAAATGACAATACACCATGCGGCTGGTTTGGAGTGAACTGTAACTCCAACAACGAGGTTGTGAAATTAGATCTGAGACATGTGGATTTGGTTGGGACACTTCCTTCTAATTTCACCTCATTGAGTCTTTCCCTGAACGAGCTAGTCCTAACTGGAACCAACCTCTCCGGTTCAATTCCGAAAGAAATAGGAACTCTTGGCGTGCTCCACTACTTGGACTTGAGTGACAATGCCCTGACAGGTGAAATCCCAAGTGAACTTTTCTTCTTGACAAAGCTTGAGCAACTCCATCTGAACTCAAACCACCTTGCGGGTTCGATTTCGAAGGCAATAGGGAACCTCACAGAGTTGACGTCGTTGCTTTTATATGACAATCAACTTGGTGGTGATACTCCCAGAACCATTGGTAACTTGAGGAAGCTGCAAGTGATCAGAGCTGGAGGAAACGAGAACCTTCAAGGCTTCTTGCCACAAGAAATTGGCAACTGTACCAATCTGGTCGTGTTGGGATTGGCTGAAACTAGTATTTCTGGTTCTCTTCCTCCAACTCTTGGCCTTCTTAAGAAGCTTGACACTCTTGCAATTTACACTTCCCTTCTCTCTGGCCAAATTCCTCCCGAACTTGGGGATTGCAACGAGCTTCAGAATATTTATCTGTACGAGAATTCCCTCTCAGGATCCATACCAAGTAGACTGGGAAACCTTAGAAACCTCAAAAATCTTCTACTATGGCAGAACAATCTAGTTGGCACCATCCCGCCAGAGCTTGGAAATTGCCACCAGCTATCCGTCATTGACATTTCGATGAACTCGCTTGTCGGAAGCATTCCCAAAAGTTTTGGAAATTTGACGTTGCTGGAGGAGCTTCAACTCAGTGTCAATCAGATTTCGGGTCAGATTCCAACAGAATTGGGAAACTGTCACTTACTCACTCACATTGAGCTGGACAACAATCTAATCACGGGTACAATACCTTCCGAATTTGGGAACCTTGGGAATCTAACTTTGCTGTTTTTGTGGCATAACAAGCTCGAAGGAACTATACCATCTTCGCTTTCGAGTTGTCAAAATCTGGAAGCAGTGGATCTGTCACAGAATGGATTGACGGGTTCCATTCCGAAGGGGATATTCCTGCTCAAGAATCTGAACAAGCTTTTGCTACTCTCTAACAATCTCTCTGGGGATATACCCCCTGAGATTGGGAACTGTACGTCTCTGATTCGGTTCCGAGCCAGCAACAATAAAATCACGGGGAACATTCCACCAAATATTGGAAATCTAAAGAATTTGAATTTCTTGGATATTGCAAGCAATCGCGTTTCAGGAGTTATTCCAGAAGAGCTCTCAGGCAGTCGAAATCTCGCATTTCTGGACCTCCACTCAAACTTGATATCAGGAAGCTTGCCGCAAAGTCTCAGCCTGCTAGTCTCGCTCCAATTTATTGATGCCTCCGATAACATGATTGAAGGTAAACTAAGCCCAAGCCTCGGAAAGCTTGGCGCACTCACCAAACTCATTCTCGGAAAGAATCATCTCTCCGGGTCCATTCCGAGTGAATTTGGTTTTTGTGCAAAGCTGCAATTATTGGACCTCAGTAGCAATAAACTCTCAGGCAAAATCCCAGGCAGTCTGGGTAACATTCCGGCGCTGGAAATCGCAATGAACCTAAGCTGGAATCAGCTATATGGCGAGATTCCTATGGAGTTTTCTGCATTGAGCAAACTTGGAGTTTTGGACATATCGCACAACGAGCTCACCGGTAACCTACAGTATCTCGAGGACCTCCAAAATCTGGTGGTCCTCAACATCTCATACAACAATCTCTCGGGTCGCGTGCCAGACAAGCCTTTCTTCTCGAAGCTTCCTCTCAGCGTCCTCGAGGGGAACCCATCGCTCTGCTTCCCCGGCAACCGATGTCCCGGAGACGTTTCCAAACGATCAATTCGGCGGACAAAGGCAGCGCGTATAGCCATGGTGGTCCTGCTGTGTATCGCGTGTTTTCTTTTCCTCACCGCCCTGTACGTCTTGGTTGACGCAAAAAGACGGTGGTTTCCGGAGGGCGATCTGGACATCAACGGTGGGGATAGCGACGTGGAGATGGGCCCACCTTGGGAGGTTACACTTTATCAGAAGCTAGACTTGTCAATCTATGACGTGGCGAGATGCCTCACAGTTGGCAACGTAATTGGGCGCGGACGATCCGGCGTAGTTTATAGAGTGGATCTCCCCTCTGGATTAACGATCGCCGTGAAAAGGTACAGATTATCGGAGAAATTCTCAGCCTCTGCATTCTCCTCAGAGATTGCCACGCTAGCGAGAATCCGGCACAGGAATATTGTACGGCTATTAGGTTGGGCGGCAAATCGGAAAACGAAATTACTGTTGTATGATTATTTACCTAACGGTAATCTAGATACACTCCTGCACGAGGGTTGCATGGGATTCATTGAGTGGGAGACGCGGTTCAAGATAGCATTGGGCGTGGCTGAAGGCTTGGCGTATCTACACCATGACTGCGTGCCAGCCATCTTGCACCGGGACGTCAAGGCGCACAACATTTTGTTAGGAGACACACACGAACCATGTTTGGCAGATTTCGGATTTGCAAGATTGGTGGACGACGACGATCACAGTCCGTTTTCCGTTAATCCACAATTCGCGGGTTCTTACGGTTACATTGCGCCAGAATATGGGTGCATGGTGAGGATAAGAGAGAAGAGCGACGTGTACAGCTTCGGAGTAGTACTGTTAGAGATAATAACGGGGAAGAGACCCATACTAGAGGCATGCATTGCGGAGGAGGAGGAGGGACAGGGACAGCACGTGATAGGGTGGGTGAGACAGAAGCTGAAGAGCAAGAGGGACCCAACAGAGATTGTGGATTCTAAGCTTCAGGGACTTCCAGACACAAACATCCAAGAGATGCTTCAGGCTCTTGGCATTGCTCTTCTTTGTACCAGTCAGCGTCCCGATGATCGCCCCACCATGAAGGATGTCGCCGCATTATTGAGGGAGATTCGACCCGACCCTTCCCTTTCCTCTGACCCGCCTCACAAGCCTACCGCCCCCACCACTTCTGTTCATGGCGTTTCCCAGAAAACGACGCCTCATCCTTCTTCGTCTTTTTCCTCATCCTCCGCCTTGTCCCTCCTCCAGTCTTCTTCTCATAATTCTCTTGCCCTTTACCACTTACCACCCACCTAG 3360 0.4789 MPVNPWTLFFLCFSLSLLRHSFIAFAVNSQGEALLSWKRTLKGSLEVLSNWNPNDNTPCGWFGVNCNSNNEVVKLDLRHVDLVGTLPSNFTSLSLSLNELVLTGTNLSGSIPKEIGTLGVLHYLDLSDNALTGEIPSELFFLTKLEQLHLNSNHLAGSISKAIGNLTELTSLLLYDNQLGGDTPRTIGNLRKLQVIRAGGNENLQGFLPQEIGNCTNLVVLGLAETSISGSLPPTLGLLKKLDTLAIYTSLLSGQIPPELGDCNELQNIYLYENSLSGSIPSRLGNLRNLKNLLLWQNNLVGTIPPELGNCHQLSVIDISMNSLVGSIPKSFGNLTLLEELQLSVNQISGQIPTELGNCHLLTHIELDNNLITGTIPSEFGNLGNLTLLFLWHNKLEGTIPSSLSSCQNLEAVDLSQNGLTGSIPKGIFLLKNLNKLLLLSNNLSGDIPPEIGNCTSLIRFRASNNKITGNIPPNIGNLKNLNFLDIASNRVSGVIPEELSGSRNLAFLDLHSNLISGSLPQSLSLLVSLQFIDASDNMIEGKLSPSLGKLGALTKLILGKNHLSGSIPSEFGFCAKLQLLDLSSNKLSGKIPGSLGNIPALEIAMNLSWNQLYGEIPMEFSALSKLGVLDISHNELTGNLQYLEDLQNLVVLNISYNNLSGRVPDKPFFSKLPLSVLEGNPSLCFPGNRCPGDVSKRSIRRTKAARIAMVVLLCIACFLFLTALYVLVDAKRRWFPEGDLDINGGDSDVEMGPPWEVTLYQKLDLSIYDVARCLTVGNVIGRGRSGVVYRVDLPSGLTIAVKRYRLSEKFSASAFSSEIATLARIRHRNIVRLLGWAANRKTKLLLYDYLPNGNLDTLLHEGCMGFIEWETRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDTHEPCLADFGFARLVDDDDHSPFSVNPQFAGSYGYIAPEYGCMVRIREKSDVYSFGVVLLEIITGKRPILEACIAEEEEGQGQHVIGWVRQKLKSKRDPTEIVDSKLQGLPDTNIQEMLQALGIALLCTSQRPDDRPTMKDVAALLREIRPDPSLSSDPPHKPTAPTTSVHGVSQKTTPHPSSSFSSSSALSLLQSSSHNSLALYHLPPT 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00521 1119 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Accr12g00521 1119 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 1056 - -
Accr12g00521 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1071 - -
Accr12g00521 1119 SMART LRR_sd22_2 166 192 - -
Accr12g00521 1119 SMART LRR_sd22_2 624 649 - -
Accr12g00521 1119 SMART LRR_sd22_2 383 412 - -
Accr12g00521 1119 SMART LRR_sd22_2 479 502 - -
Accr12g00521 1119 Pfam Protein kinase domain 777 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00521 1119 SUPERFAMILY L domain-like 376 691 - -
Accr12g00521 1119 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Accr12g00521 1119 SUPERFAMILY L domain-like 27 301 - -
Accr12g00521 1119 Gene3D Transferase(Phosphotransferase) domain 1 851 1067 - -
Accr12g00521 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 409 695 - -
Accr12g00521 1119 SMART LRR_typ_2 551 575 IPR003591 -
Accr12g00521 1119 SMART LRR_typ_2 647 680 IPR003591 -
Accr12g00521 1119 SMART LRR_typ_2 166 189 IPR003591 -
Accr12g00521 1119 SMART LRR_typ_2 118 142 IPR003591 -
Accr12g00521 1119 SMART LRR_typ_2 287 311 IPR003591 -
Accr12g00521 1119 SMART LRR_typ_2 383 407 IPR003591 -
Accr12g00521 1119 SMART LRR_typ_2 431 455 IPR003591 -
Accr12g00521 1119 SMART LRR_typ_2 335 359 IPR003591 -
Accr12g00521 1119 SMART LRR_typ_2 479 502 IPR003591 -
Accr12g00521 1119 Pfam Leucine rich repeat 362 420 IPR001611 GO:0005515
Accr12g00521 1119 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515
Accr12g00521 1119 Gene3D Ribonuclease Inhibitor 247 355 IPR032675 -
Accr12g00521 1119 Gene3D Ribonuclease Inhibitor 605 692 IPR032675 -
Accr12g00521 1119 SMART serkin_6 775 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00521 1119 FunFam Predicted protein 184 282 - -
Accr12g00521 1119 Gene3D Ribonuclease Inhibitor 360 604 IPR032675 -
Accr12g00521 1119 ProSiteProfiles Protein kinase domain profile. 775 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00521 1119 Gene3D Phosphorylase Kinase; domain 1 767 850 - -
Accr12g00521 1119 SUPERFAMILY Protein kinase-like (PK-like) 762 1055 IPR011009 -
Accr12g00521 1119 PRINTS Leucine-rich repeat signature 578 591 - -
Accr12g00521 1119 PRINTS Leucine-rich repeat signature 624 637 - -
Accr12g00521 1119 Gene3D Ribonuclease Inhibitor 141 234 IPR032675 -
Accr12g00521 1119 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Accr12g00521 1119 FunFam Nuclear pore complex protein NUP107 27 183 - -
Accr12g00521 1119 SUPERFAMILY L domain-like 209 473 - -
Accr12g00521 1119 MobiDBLite consensus disorder prediction 1070 1098 - -
Accr12g00521 1119 FunFam Leucine-rich repeat receptor protein kinase EMS1 304 403 - -
Accr12g00521 1119 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Accr12g00521 1119 MobiDBLite consensus disorder prediction 1059 1098 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00521 Accr-Chr12 4870066 4874004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00521 24 1059 Receptor kinase-like Gene Family AT5G56040 54.267 0.0 1066
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Accr12g00521 Pkinase 7.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00521 - - gmx:100778064 1566.21