Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00516 ATGGCATCATCATCAAGCTCTTACTCATCTCCATGCGCTGCCTGCAAATTCCTGAGAAGAAAATGCATGCCAGGTTGCATCTTCGCGCCTTATTTCCCACCAGAGGAGCCTCAAAAATTCGCGCACGTGCACAAAATCTTCGGAGCCAGCAACGTTACCAAGCTCCTCAACGAGCTCCTTCCTCACCAGAGAGAAGACGCCGTAAACTCTCTCGCCTACGAAGCAGAGGCGCGTGTCAGAGACCCCGTTTACGGCTGCGTCGGTGCCATCTCCTTCCTTCAAAGACAGGTTCAGAGGCTTCAGAAGGAGCTCGACGCCGCTAACGCCGATCTCCTCCGTTATGCCTGCAACGAGCTCCCTCCGCCGCCCGCTAATTCTCTCTCCATGGTCCCACCACCTGGTTTAGGGATCACGCCTTCGGCACTCCAAATCCAACAACTCCCTCAGAGGCCAAGGTCGACCACCATGGAATATATTAATGGCGGTGGCGGGTTGTACAGGCAATTTCCGGCTTCTTATAATTACTCTCTTCCTTATACTATTCCATGGGCTGATACGGCTTCTGATGGCATCGATGAGGGAGCTGCAGCAGGAGGAGGTGGCGGTGGAGGTACTTTGTAA 621 0.5378 MASSSSSYSSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFAHVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYACNELPPPPANSLSMVPPPGLGITPSALQIQQLPQRPRSTTMEYINGGGGLYRQFPASYNYSLPYTIPWADTASDGIDEGAAAGGGGGGGTL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00516 206 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Accr12g00516 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 137 - -
Accr12g00516 206 Coils Coil 90 117 - -
Accr12g00516 206 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00516 Accr-Chr12 4814741 4815361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00516 1 185 AS2 family AT5G63090 65.054 2.06e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr12g00516 LOB 8.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00516 - - pcin:129320934 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00216 8 2923034 2923531 Accr12g00516 12 4814741 4815361 CCT
Accr8g00216 8 2923034 2923531 Accr12g00516 12 4814741 4815361 ECH
Accr12g00516 12 4814741 4815361 Accr12g00516 12 4814741 4815361 ECH