Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00505 ATGGAGGTTACCCTGCAAAATCCCCCAGTTGACGAAATATTGGAGCAAAATGGTGTCGCCGCCCAAGACCCAGCTCCTTCTCCCATGCTTTCTGAAGAGAAGGTTATCGTCTCTGTCGAAGTATGTTTGAAACCTTCGAGTACAGCTCAGATCGCAGATGTCCGTTCAGCCGTCGAGAGGATGCTCGAGAACAGGTGTTTGAGCTATATTGATGGACCCATTCCTCTGCCTCTTGATGACACGTTTCTTTCAGAAAACGTGCAAAGAATCTGTATTTGCGATACTGATGAGTCGACCAGCAGTCATAACATTCTTTTGTTCTGGCAAGTCAAGCCTGATGTGCATGTCTTTCAGCTTAGTGAAGAAGGACCATGTGAGGAAATAAGTACCGATGGCCAACCTTCCAGCTTCAATGAATGGATTCTTCCAGCAAAAGAATTTGATGGCTTGTGGGAAAGCTTAATATATGAATCTGGTCTCAAGCAAAGATTGTTAAGATATGCAGCGAGCGCTTTGCTTTTTACTGAAAAGGGCGTTGATCCATTTCTGGTTTCATGGAACCGCATTGTTCTCTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCACAAAAACTATCAATTCGATTCAATCAAAGATACCCCCAGTGTCAGCTGATTGAAGTTAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTCGCAAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCCAGAAAAGCTGCTTTATCTGGTTCTGAACCATCAGACTCTATTCGGGTTGTCAATGCTTTGTTAACTCAGATGGACAAGTTAAAATCTTCTCCAAATGTGATAATTCTAACTACATCCAACATAACTACTGCTATCGATATTGCTTTTGTTGATCGAGCCGATATCAAAGCATATGTTGGTCCTCCAACTCTCCAAGCTCGCTATGAAATACTCAAGTCGTGCTTGGAGGAATTGATGCGCACAGGGATTTTGACAAGTTTACAGGATTGTATGAACATCAAGCTTCCAAATTATGCTAATGCTAAGGAAAAGTTGAATACACCTGAGAATCATGAAAAAGCCTCTGAACTGTGTAAACAATTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGCGGAAGATCTTTGAGAAAGCTTCCATTCTTGGCACACGCTGCCCTTGCCAATCCTTCAGATTGCAACCCATTAAAGTTCTTATGTACAATGATAGAAACAGCGAAGAGGGACCGCTCTGAGCTTCCCGACTGA 1353 0.4235 MEVTLQNPPVDEILEQNGVAAQDPAPSPMLSEEKVIVSVEVCLKPSSTAQIADVRSAVERMLENRCLSYIDGPIPLPLDDTFLSENVQRICICDTDESTSSHNILLFWQVKPDVHVFQLSEEGPCEEISTDGQPSSFNEWILPAKEFDGLWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITTAIDIAFVDRADIKAYVGPPTLQARYEILKSCLEELMRTGILTSLQDCMNIKLPNYANAKEKLNTPENHEKASELCKQLLETAEACEGMSGRSLRKLPFLAHAALANPSDCNPLKFLCTMIETAKRDRSELPD 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00505 450 SMART AAA_5 186 338 IPR003593 GO:0016887
Accr12g00505 450 Pfam ATPase family associated with various cellular activities (AAA) 190 335 IPR003959 GO:0005524|GO:0016887
Accr12g00505 450 CDD RecA-like_Pch2-like 136 334 - -
Accr12g00505 450 FunFam pachytene checkpoint protein 2 homolog 130 352 - -
Accr12g00505 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 419 IPR027417 -
Accr12g00505 450 ProSitePatterns AAA-protein family signature. 308 327 IPR003960 GO:0005524|GO:0016887
Accr12g00505 450 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 190 208 IPR001270 GO:0005524
Accr12g00505 450 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 304 318 IPR001270 GO:0005524
Accr12g00505 450 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 29 447 IPR044539 -
Accr12g00505 450 Gene3D - 133 353 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00505 Accr-Chr12 4658231 4664000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00505 190 356 Calmodulin-binding Proteins AT3G56690 29.586 2.75e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00505 K22399 - gmx:100795009 740.339