Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00504 ATGAGTTCTTCCATGGAGGTTACCCTGCAAAATCCCCCAGTTGACGAAATATTGGAGCAAAATGGTGTCGCCGCCCAAGACCCAGCTCCTTCTCCCATGCTTTCTGAAGAGAAGGTTATCGTCTCTGTCGAAGTATGTTTGAAACCTTCGAGTACAGCTCAGATCGCAGATGTCCGTTCAGCCGTCGAGAGGATGCTCGAGAACAGGTGTTTGAGCTATATTGATGGACCCATTCCTCTGCCTCTTGATGACACGTTTCTTTCAGAAAACGTGCAAAGAATCTGTATTTGCGATACTGATGAGTCGACCAGCAGTCATAACATTCTTTTGTTCTGGCAAGTCAAGCCTGATGTGCATGTCTTTCAGCTTAGTGAAGAAGGACCATGTGAGGAAATAAGTACCGATGGCCAACCTTCCAGCTTCAATGAATGGATTCTTCCAGCAAAAGAATTTGATGGCTTGTGGGAAAGCTTAATATATGAATCTGGTCTCAAGCAAAGATTGTTAAGATATGCAGCGAGCGCTTTGCTTTTTACTGAAAAGGGCGTTGATCCATTTCTGGTTTCATGGAACCGCATTGTTCTCTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCACAAAAACTATCAATTCGATTCAATCAAAGATACCCCCAGTGTCAGCTGATTGAAGTTAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTCGCAAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCCAGAAAAGCTGCTTTATCTGGTTCTGAACCATCAGACTCTATTCGGGTTGTCAATGCTTTGTTAACTCAGATGGACAAGTTAAAATCTTCTCCAAATGTGATAATTCTAACTACATCCAACATAACTACTGCTATCGATATTGCTTTTGTTGATCGAGCCGATATCAAAGCATATGTTGGTCCTCCAACTCTCCAAGCTCGCTATGAAATACTCAAGTCGTGCTTGGAGGAATTGATGCGCACAGGGATTTTGACAAGTTTACAGGATTGTATGAACATCAAGCTTCCAAATTATGCTAATGCTAAGGAAAAGTTGAATACACCTGAGAATCATGAAAAAGCCTCTGAACTGTGTAAACAATTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGCGGAAGATCTTTGAGAAAGCTTCCATTCTTGGCACACGCTGCCCTTGCCAATCCTTCAGATTGCAACCCATTAAAGTTCTTATGTACAATGATAGAAACAGCGAAGAGGGACCGCTCTGAGCTTCCCGACTGA 1365 0.4234 MSSSMEVTLQNPPVDEILEQNGVAAQDPAPSPMLSEEKVIVSVEVCLKPSSTAQIADVRSAVERMLENRCLSYIDGPIPLPLDDTFLSENVQRICICDTDESTSSHNILLFWQVKPDVHVFQLSEEGPCEEISTDGQPSSFNEWILPAKEFDGLWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITTAIDIAFVDRADIKAYVGPPTLQARYEILKSCLEELMRTGILTSLQDCMNIKLPNYANAKEKLNTPENHEKASELCKQLLETAEACEGMSGRSLRKLPFLAHAALANPSDCNPLKFLCTMIETAKRDRSELPD 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00504 454 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524|GO:0016887
Accr12g00504 454 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Accr12g00504 454 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Accr12g00504 454 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 33 451 IPR044539 -
Accr12g00504 454 CDD RecA-like_Pch2-like 140 338 - -
Accr12g00504 454 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Accr12g00504 454 SMART AAA_5 190 342 IPR003593 GO:0016887
Accr12g00504 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 423 IPR027417 -
Accr12g00504 454 Gene3D - 137 357 IPR027417 -
Accr12g00504 454 FunFam pachytene checkpoint protein 2 homolog 134 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00504 Accr-Chr12 4658231 4664012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00504 194 360 Calmodulin-binding Proteins AT3G56690 29.586 2.41e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00504 K22399 - gmx:100795009 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00504 12 4658231 4664012 Accr12g00504 12 4658231 4664012 ECH