Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00485 ATGGCAGAAACATGCCTTCTTTCTTTGCCCTCACTACTGTGCAACAAAACCAAACACCCCCATTTCTCATCAATTCCGTCTAAACCCCTCAACCTTCAGCTCTCATGCTCCAACTCTTCACTCTTTTTACCTTCTCCATCTCCCATCAAGAGAACTCATTCTTCCTCTATATTGACATTTGTTGCACAGACATCGGATTGGGCTCAGCAAGAAGCTGACAACACAGTTGCTGTTGGAGACGATGAACCCGGCTGGGAAAATCAAGAGGCCGACAATACAGAAGCTGGCCTTTCAGACTCGGAGGCTGAGGTTGGTGAAGACGGGATTTTAGAGGAGGGGGGATATGAAGAACCGCCTGAAGAAGCCAAAATCTATGTCGGTAACTTGCCGTTCGATGTTGATAGCGAAAAATTGGCTATGCTTTTTGAGCAAGCTGGAACTGTTGAAATTGCTGAGGTGATTTATAACAGGGAGACTGACCAAAGTCGTGGGTTCGGATTTGTAACGATGAGCACAGTTGAAGAAGCCGAGAAAGCTGTAGAAAAGTTCAGCCGCTACGATTTTGGTGGAAGACTACTGACTGTTAATAAGGCTGCTCCAAGAGGATCAAGGCCTGAACGTCCACCTCGTGCCTCCGAACCTGCTTTCAGAATCCACGTTGGCAACCTGCCGTGGGACGTTGATAATACTCGCCTGGAGCAAATCTTCAGCGAACAGGGAACGGTTGTGAATGCTCGGATATTTTATGACAGAGAGACTGGCCGATCACGCGGTTTTGGATTCGTCACAATGGCCAGTGAGACAGAAATGAATGATGCTATTGCTGCTCTTGATGGTCAGAGTGTGGATGGGAGAGCGATCAGAGTGAGTGCTGCTGAGGAAAGGCCCAGGCGTGGTTCCTTTTGA 906 0.4812 MAETCLLSLPSLLCNKTKHPHFSSIPSKPLNLQLSCSNSSLFLPSPSPIKRTHSSSILTFVAQTSDWAQQEADNTVAVGDDEPGWENQEADNTEAGLSDSEAEVGEDGILEEGGYEEPPEEAKIYVGNLPFDVDSEKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEKFSRYDFGGRLLTVNKAAPRGSRPERPPRASEPAFRIHVGNLPWDVDNTRLEQIFSEQGTVVNARIFYDRETGRSRGFGFVTMASETEMNDAIAALDGQSVDGRAIRVSAAEERPRRGSF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00485 301 FunFam 31 kDa ribonucleoprotein, chloroplastic 62 205 - -
Accr12g00485 301 MobiDBLite consensus disorder prediction 77 103 - -
Accr12g00485 301 CDD RRM2_NsCP33_like 217 292 - -
Accr12g00485 301 Gene3D - 205 301 IPR012677 -
Accr12g00485 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 288 IPR000504 GO:0003723
Accr12g00485 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 193 IPR000504 GO:0003723
Accr12g00485 301 CDD RRM1_PSRP2_like 123 202 - -
Accr12g00485 301 SUPERFAMILY RNA-binding domain, RBD 117 210 IPR035979 GO:0003676
Accr12g00485 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Accr12g00485 301 SMART rrm1_1 217 290 IPR000504 GO:0003723
Accr12g00485 301 SMART rrm1_1 123 196 IPR000504 GO:0003723
Accr12g00485 301 Gene3D - 62 204 IPR012677 -
Accr12g00485 301 PANTHER OS02G0815200 PROTEIN 24 296 - -
Accr12g00485 301 FunFam 31 kDa ribonucleoprotein, chloroplastic 206 300 - -
Accr12g00485 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Accr12g00485 301 SUPERFAMILY RNA-binding domain, RBD 208 299 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00485 Accr-Chr12 4483139 4484889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00485 124 298 Eukaryotic Initiation Factors Gene Family AT3G16380 35.870 7.97e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00485 - - qsa:O6P43_030799 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00281 8 4018938 4021547 Accr12g00485 12 4483139 4484889 CCT
Accr8g00281 8 4018938 4021547 Accr12g00485 12 4483139 4484889 ECH
Accr12g00485 12 4483139 4484889 Accr12g00485 12 4483139 4484889 ECH