Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr12g00485 | ATGGCAGAAACATGCCTTCTTTCTTTGCCCTCACTACTGTGCAACAAAACCAAACACCCCCATTTCTCATCAATTCCGTCTAAACCCCTCAACCTTCAGCTCTCATGCTCCAACTCTTCACTCTTTTTACCTTCTCCATCTCCCATCAAGAGAACTCATTCTTCCTCTATATTGACATTTGTTGCACAGACATCGGATTGGGCTCAGCAAGAAGCTGACAACACAGTTGCTGTTGGAGACGATGAACCCGGCTGGGAAAATCAAGAGGCCGACAATACAGAAGCTGGCCTTTCAGACTCGGAGGCTGAGGTTGGTGAAGACGGGATTTTAGAGGAGGGGGGATATGAAGAACCGCCTGAAGAAGCCAAAATCTATGTCGGTAACTTGCCGTTCGATGTTGATAGCGAAAAATTGGCTATGCTTTTTGAGCAAGCTGGAACTGTTGAAATTGCTGAGGTGATTTATAACAGGGAGACTGACCAAAGTCGTGGGTTCGGATTTGTAACGATGAGCACAGTTGAAGAAGCCGAGAAAGCTGTAGAAAAGTTCAGCCGCTACGATTTTGGTGGAAGACTACTGACTGTTAATAAGGCTGCTCCAAGAGGATCAAGGCCTGAACGTCCACCTCGTGCCTCCGAACCTGCTTTCAGAATCCACGTTGGCAACCTGCCGTGGGACGTTGATAATACTCGCCTGGAGCAAATCTTCAGCGAACAGGGAACGGTTGTGAATGCTCGGATATTTTATGACAGAGAGACTGGCCGATCACGCGGTTTTGGATTCGTCACAATGGCCAGTGAGACAGAAATGAATGATGCTATTGCTGCTCTTGATGGTCAGAGTGTGGATGGGAGAGCGATCAGAGTGAGTGCTGCTGAGGAAAGGCCCAGGCGTGGTTCCTTTTGA | 906 | 0.4812 | MAETCLLSLPSLLCNKTKHPHFSSIPSKPLNLQLSCSNSSLFLPSPSPIKRTHSSSILTFVAQTSDWAQQEADNTVAVGDDEPGWENQEADNTEAGLSDSEAEVGEDGILEEGGYEEPPEEAKIYVGNLPFDVDSEKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEKFSRYDFGGRLLTVNKAAPRGSRPERPPRASEPAFRIHVGNLPWDVDNTRLEQIFSEQGTVVNARIFYDRETGRSRGFGFVTMASETEMNDAIAALDGQSVDGRAIRVSAAEERPRRGSF | 301 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr12g00485 | 301 | FunFam | 31 kDa ribonucleoprotein, chloroplastic | 62 | 205 | - | - | |
Accr12g00485 | 301 | MobiDBLite | consensus disorder prediction | 77 | 103 | - | - | |
Accr12g00485 | 301 | CDD | RRM2_NsCP33_like | 217 | 292 | - | - | |
Accr12g00485 | 301 | Gene3D | - | 205 | 301 | IPR012677 | - | |
Accr12g00485 | 301 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 219 | 288 | IPR000504 | GO:0003723 | |
Accr12g00485 | 301 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 124 | 193 | IPR000504 | GO:0003723 | |
Accr12g00485 | 301 | CDD | RRM1_PSRP2_like | 123 | 202 | - | - | |
Accr12g00485 | 301 | SUPERFAMILY | RNA-binding domain, RBD | 117 | 210 | IPR035979 | GO:0003676 | |
Accr12g00485 | 301 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 216 | 294 | IPR000504 | GO:0003723 | |
Accr12g00485 | 301 | SMART | rrm1_1 | 217 | 290 | IPR000504 | GO:0003723 | |
Accr12g00485 | 301 | SMART | rrm1_1 | 123 | 196 | IPR000504 | GO:0003723 | |
Accr12g00485 | 301 | Gene3D | - | 62 | 204 | IPR012677 | - | |
Accr12g00485 | 301 | PANTHER | OS02G0815200 PROTEIN | 24 | 296 | - | - | |
Accr12g00485 | 301 | FunFam | 31 kDa ribonucleoprotein, chloroplastic | 206 | 300 | - | - | |
Accr12g00485 | 301 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 122 | 200 | IPR000504 | GO:0003723 | |
Accr12g00485 | 301 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 299 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr12g00485 | Accr-Chr12 | 4483139 | 4484889 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr12g00485 | 124 | 298 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 35.870 | 7.97e-23 | 96.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr12g00485 | - | - | qsa:O6P43_030799 | 391.734 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Accr8g00281 | 8 | 4018938 | 4021547 | Accr12g00485 | 12 | 4483139 | 4484889 | CCT | |
Accr8g00281 | 8 | 4018938 | 4021547 | Accr12g00485 | 12 | 4483139 | 4484889 | ECH | |
Accr12g00485 | 12 | 4483139 | 4484889 | Accr12g00485 | 12 | 4483139 | 4484889 | ECH |