LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr12g00481	ATGGCTCTGCCTACTGCAAATTCACACCTCTTATTACTCTTTTCATTCTTCTCCCTTTTCTTCTTCAACCTCCATGCCAAAATCGATATCCATCCTTCAGATCTCAAAGCTTTCTTGATTTTTCACAAGGACTTGGGTTTCAATGGTCAACGCCAACCGTTTACCACTCACCCATGTGACACCGACGGCGTCTTCTGCGAGAGGAGGCTCTCCAGCAACGAGAGCTATGTTCTCAGAATCACCAGAATCATCTTCAACTCTAAGAAGCTGAATGGAGTTTTGTCCCCTGCCATTGGCCGTCTCTCTGAGCTCAAGGAGCTTTCTCTTTCGGACAACCAGCTCACGAGTCAAATTCCAACTCAGATTGTTGAGTGCCGGAAGCTGGAGATTCTTGACATCGGAAACAACCGCTTCTCCGGCGAGGTCCCATCTGAATTGTCCTCCCTCATTCGACTCCGAGTTCTTGACATATCTTCCAACAAATTCTCTGGCAATTTGAATTTCTTGAAGTATTTCCCCAACCTGGAAACTCTCTCAGTGGCAGACAACCTCTTCAAGGGGAGAATTCCAGCATCGGTTCGCTCATTTCGCAATCTCCAACACTTCAACTTTTCCGGGAATCACTTCCTTGAAATTCCTCCCCCATTGTTGAAGAAATTCGGACACTCATCTGTTATCCCCAAAAGATACATCCTCACCGAGAATTTAGCTCCGGTTCAAGCTCGGCCTCCAAAAGCCAAAAGGAACCCTTATAATAATTCAGCACTTTCAAATCCTCCGGCTCAAGCTCCAACAGCACAACACCACGAACACAAGTCAAAAAAGAGGAAACTAGGTGGATGGATTCTTGGTTTCCTAGCAGGAGCATTCGCCGGGAGCATATCAGGGTTCATATTTTGTTTGCTATTCAAGTTGGCCGTGGCTGTGATCAAAGGAGGAGGGAAGAGCTCAGGCCCTGCAATTTACAGTCCATTGATTAAAAAAGCAGAGGACTTAGCTTTTCTAGAGAAAGAAGATGGAGTAAGCTCCTTAGAAATCATCGGAAAAGGAGGATGTGGAGAAGTTTACAAGGCAGAATTACCAGGAAGCAACAAAATTATTGCTATAAAGAAGGTCGTTCAACCTTCAAAAGATGCAGTTGAACTCTCCGAAGAAGACAGTAAGCTTCTGAACAAAAAAATGCGCCAAATTCGATCAGAGATCAACACGGTCGGCCAAATTCGACACCGAAACCTACTGCCTCTACTAGCTCACGTATCCAGGCCCGATTGTCACTACCTTGTGTACGAATACATGAAGAATGGGAGCTTGCAAGATGTGTTGAATCAAGTCCAAATAGGTGTAAGAGAGTTGGATTGGTTGGCACGTCACAAGATTGCTGTTGGTGTAGCATCTGGCCTAGAGTACCTTCACATGCATCATACTCCTCGTATTATTCACAGGGATCTCAAGCCTGGGAATATTCTTCTTGATGATGACATGGAAGCTAGAATTGCAGATTTTGGGCTTGCAAAAGCAATGCCAGAAGCTTATACGCATGTCTCAACTTCAAACGTGGCTGGAACTGTGGGCTACATCGCACCAGAGTATCACCAGACTGTGAAATTCACTGATAAGTGTGACATTTACAGCTTTGGGGTTGTTCTTGGGATCTTAGTGATGGGAAAGATTCCATCTGATTCTTTCTTCCAGGAAACTGAGGAGTTGAGTTTGGTGAAGTGGATGAGGAATGTGATGACGTCAGATAATCCAACAAGAGCGATTGATGAAAAGCTCAGAGGAAATGGGTATGAGGAGCAGATGCTTCTGGTTCTTAAGATTGCTTGCTTTTGCACTCTTGATGATCCAAAAGAGAGGCCTAACAGTAAAGACATCAGATGCATGTTGTCCCAAATTAAGCACTGA	1905	0.4467	MALPTANSHLLLLFSFFSLFFFNLHAKIDIHPSDLKAFLIFHKDLGFNGQRQPFTTHPCDTDGVFCERRLSSNESYVLRITRIIFNSKKLNGVLSPAIGRLSELKELSLSDNQLTSQIPTQIVECRKLEILDIGNNRFSGEVPSELSSLIRLRVLDISSNKFSGNLNFLKYFPNLETLSVADNLFKGRIPASVRSFRNLQHFNFSGNHFLEIPPPLLKKFGHSSVIPKRYILTENLAPVQARPPKAKRNPYNNSALSNPPAQAPTAQHHEHKSKKRKLGGWILGFLAGAFAGSISGFIFCLLFKLAVAVIKGGGKSSGPAIYSPLIKKAEDLAFLEKEDGVSSLEIIGKGGCGEVYKAELPGSNKIIAIKKVVQPSKDAVELSEEDSKLLNKKMRQIRSEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEYMKNGSLQDVLNQVQIGVRELDWLARHKIAVGVASGLEYLHMHHTPRIIHRDLKPGNILLDDDMEARIADFGLAKAMPEAYTHVSTSNVAGTVGYIAPEYHQTVKFTDKCDIYSFGVVLGILVMGKIPSDSFFQETEELSLVKWMRNVMTSDNPTRAIDEKLRGNGYEEQMLLVLKIACFCTLDDPKERPNSKDIRCMLSQIKH	634

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr12g00481	634	SUPERFAMILY	L domain-like	54	220	-	-
	Accr12g00481	634	Pfam	Protein kinase domain	343	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g00481	634	ProSiteProfiles	Protein kinase domain profile.	341	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g00481	634	Pfam	Leucine rich repeat	103	162	IPR001611	GO:0005515
	Accr12g00481	634	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	478	490	IPR008271	GO:0004672\|GO:0006468
	Accr12g00481	634	Gene3D	Transferase(Phosphotransferase) domain 1	436	634	-	-
	Accr12g00481	634	SUPERFAMILY	Protein kinase-like (PK-like)	333	629	IPR011009	-
	Accr12g00481	634	Gene3D	Phosphorylase Kinase; domain 1	341	435	-	-
	Accr12g00481	634	SMART	serkin_6	341	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g00481	634	MobiDBLite	consensus disorder prediction	241	271	-	-
	Accr12g00481	634	Coils	Coil	380	400	-	-
	Accr12g00481	634	FunFam	Leucine-rich repeat receptor-like protein kinase	432	634	-	-
	Accr12g00481	634	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	79	633	-	-
	Accr12g00481	634	FunFam	Leucine-rich repeat receptor protein kinase EMS1	72	169	-	-
	Accr12g00481	634	MobiDBLite	consensus disorder prediction	250	264	-	-
	Accr12g00481	634	FunFam	leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1	328	431	-	-
	Accr12g00481	634	CDD	STKc_IRAK	347	632	-	-
	Accr12g00481	634	Gene3D	Ribonuclease Inhibitor	31	236	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr12g00481	Accr-Chr12	4452852	4454756	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr12g00481	1	634	Receptor kinase-like Gene Family	AT2G31880	62.346	0.0	809

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-2	Accr12g00481		Pkinase	9e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr12g00481	-		-	qsa:O6P43_022621	927.546