Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00474 ATGGCCAAGTCTTGTTGTCAATCGCAAGAAGATATTGCGAATGAAGCTATAAAGCACGCTTTGAAGGCTTTGCGGAAGCGGCATTTAGCTGAAGAAGGCGCTCATGCTCCAGTTTTTGAAGCTCTTTCCAGGCCTTTCGTTTCCCAGGGCTCTGAGTGGAAGGAGAAAGCAGAGAAACTGGAAGAGGAACTTCAACAAATCTACAAAGCGCAATCCCGACTGTCCGAGCAACTGGTTGTTGAAGTAGCTGAATCAAGAGCTTCAAAAGCTTTGGCTCAAGAGAAAGAGGCTGCAATCAATGATCTGCAAAAGGAGGTGACTGAATTCAGGGATGAAAGTGCTCAATTAAAGAAAGACTTAGAAGAAAAGATTAAAGCTCTCGAATTGATTATTAGTGAAAATGCAGAACTTAAAACGCAGTTGGAACAGATGACTCTCAAAGCCAAGACTACTGAGGCTGAAAACAAGATGTTAGTTGACCGGTGGATGCTGGAAAAAATGAAGGATGCTGAACGCCTCAATGAGGTAAATGCACTGTATGAAGATGTGGTTGGACGGCTAAAGGCCAGTGATTTAGAAAAACTAGCAAAGCAGCAAGTAGACGGCATAGTTCGACAAGGTGAAGAAGGTGCAGAGTTCTTTCTAGAGTCAACTAACCCCTCAACATGCAAATACAGGCTCCAAGCCCATGAAGGTGGCTGTGCTTCTGCTTTGTTTGTCTACAACTCCAGTAAATTGATTACTGGGGGACATGATCGGTCAGTTAAAGTGTGGGACACTAATACAGGAGCATTGAGTTCTAATCTTTCTGGCTGCCTTGGCTCTGTCTTGGACCTCACAGTTACCCATGACAATCAGTCTGTTATTGCTGCTAGCAGCTCAAACAACTTGTTTGTGTGGGATGTCAACTCAGGCCGGGTTCGTCACACCCTTACTGGTCATACAGATAAAGTGTGTGCTGTTGATGTCAGCAAGGCTTCGAGTCGCCATGTTGTCAGTTCAGCATATGATCGAACTATCAAAGTTTGGGACTTGGTAAAAGGTTACTGCTCCAACACAATAATCTTTTACAGCAACTGTAATGCTCTTAGCTTCAGCATGGATGGACTGACCATATTTTCTGGTCATGTTGATGGAAATCTTCGGTTATGGGATATTCAGTCTGGAAAGCTACTTAGTGAGGTTGCTGCTCATTCGGCTGCAGTCACTTCAATATCTCTTTCTCGAAATGGAAACGTTGTGTTGACCAGTGGAAGGGACAATATACACAATATGTTTGATGTGCGGACTCTGGAGGTTTGTGGCACACTGAGAGCAACAGGAAACAGAGTGTCATCTAATTGGAGCCGCTCGTGCATGAGTCCTGATGATAACCATGTGGCTGCTGGATCTGCTGATGGATCTGTTCATATTTGGTCTGTATCCAAGTCTAATATTGTCAGTACTCTGAAAGAACACAATTCGCCTGTATTGTGTTGTACATGGAGCGGACTTGGAAAACCCCTCGCCTCAGCTGACAAGAATGGGGTGGTTTGTGTCTGGACCTGA 1548 0.4451 MAKSCCQSQEDIANEAIKHALKALRKRHLAEEGAHAPVFEALSRPFVSQGSEWKEKAEKLEEELQQIYKAQSRLSEQLVVEVAESRASKALAQEKEAAINDLQKEVTEFRDESAQLKKDLEEKIKALELIISENAELKTQLEQMTLKAKTTEAENKMLVDRWMLEKMKDAERLNEVNALYEDVVGRLKASDLEKLAKQQVDGIVRQGEEGAEFFLESTNPSTCKYRLQAHEGGCASALFVYNSSKLITGGHDRSVKVWDTNTGALSSNLSGCLGSVLDLTVTHDNQSVIAASSSNNLFVWDVNSGRVRHTLTGHTDKVCAVDVSKASSRHVVSSAYDRTIKVWDLVKGYCSNTIIFYSNCNALSFSMDGLTIFSGHVDGNLRLWDIQSGKLLSEVAAHSAAVTSISLSRNGNVVLTSGRDNIHNMFDVRTLEVCGTLRATGNRVSSNWSRSCMSPDDNHVAAGSADGSVHIWSVSKSNIVSTLKEHNSPVLCCTWSGLGKPLASADKNGVVCVWT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00474 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 394 IPR001680 GO:0005515
Accr12g00474 515 Gene3D - 90 163 - -
Accr12g00474 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 483 515 IPR001680 GO:0005515
Accr12g00474 515 SUPERFAMILY WD40 repeat-like 219 514 IPR036322 GO:0005515
Accr12g00474 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 430 IPR001680 GO:0005515
Accr12g00474 515 Pfam Autophagy protein 16 (ATG16) 49 174 IPR013923 -
Accr12g00474 515 CDD WD40 223 514 - -
Accr12g00474 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 263 - -
Accr12g00474 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 483 515 - -
Accr12g00474 515 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Accr12g00474 515 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Accr12g00474 515 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Accr12g00474 515 SMART WD40_4 304 344 IPR001680 GO:0005515
Accr12g00474 515 SMART WD40_4 388 427 IPR001680 GO:0005515
Accr12g00474 515 SMART WD40_4 430 473 IPR001680 GO:0005515
Accr12g00474 515 SMART WD40_4 262 301 IPR001680 GO:0005515
Accr12g00474 515 SMART WD40_4 347 385 IPR001680 GO:0005515
Accr12g00474 515 SMART WD40_4 220 259 IPR001680 GO:0005515
Accr12g00474 515 SMART WD40_4 476 515 IPR001680 GO:0005515
Accr12g00474 515 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
Accr12g00474 515 PANTHER AUTOPHAGY PROTEIN 16-LIKE 9 486 IPR045160 GO:0000045
Accr12g00474 515 CDD Atg16_CCD 89 177 - -
Accr12g00474 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 454 482 IPR001680 GO:0005515
Accr12g00474 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Accr12g00474 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 353 IPR001680 GO:0005515
Accr12g00474 515 FunFam Autophagy-related protein 16 211 515 - -
Accr12g00474 515 Coils Coil 50 77 - -
Accr12g00474 515 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Accr12g00474 515 Gene3D - 449 515 IPR015943 GO:0005515
Accr12g00474 515 Gene3D - 356 448 IPR015943 GO:0005515
Accr12g00474 515 Gene3D - 169 355 IPR015943 GO:0005515
Accr12g00474 515 ProSitePatterns Trp-Asp (WD) repeats signature. 246 260 IPR019775 -
Accr12g00474 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 345 - -
Accr12g00474 515 Coils Coil 85 161 - -
Accr12g00474 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Accr12g00474 515 Pfam WD domain, G-beta repeat 390 421 IPR001680 GO:0005515
Accr12g00474 515 Pfam WD domain, G-beta repeat 479 514 IPR001680 GO:0005515
Accr12g00474 515 Pfam WD domain, G-beta repeat 307 344 IPR001680 GO:0005515
Accr12g00474 515 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
Accr12g00474 515 Pfam WD domain, G-beta repeat 360 385 IPR001680 GO:0005515
Accr12g00474 515 Pfam WD domain, G-beta repeat 452 473 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00474 Accr-Chr12 4376756 4379451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00474 365 510 U-box Gene Family AT1G04510 26.531 4.32e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00474 K17890 - gmx:100778336 845.114