Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00472 ATGGCCGTGGAAACCATCGCTCCGACCGGTATTTCTCCCATCGCCGGCATCGACTACCTGAGCAGCCGGGTCTTACCTGAACCTGATGTTTTCATTCACACATCTAGCGGCGAGCGCATTCCCGCGCACACAAGCATTCTGGCTTCAGTGTCGCCAGTTTTGGAGAATATCATAGATCAGCCACGCAGGCATAGGAGCTCCGAGAGAATCATTCAAATTCACGGTGTTCCTTGCGAAGCCGTCACCGCTTTTCTCGGCTTCCTCTATTGTTCCAGGTGCACGGATGAGCAGATGGAGAAGTACGGGGTTCATCTGCTGGCATTGTCGCACGTGTATTTGGTGCCACAACTGAAGCAGAGGTGCATCAAAGTGCTTGCCGAACGGTTAACGATCGAGAATGTGGTGGATTTGCTCCAACTCGCGAGGCTCTGCGACGCGCCTGATCTTTACATCAAGTGTATGAAGCTACTCACTAATCACTTCAAATCTGTAGAAGCAACAGAGGGTTGGAAATTCTTGCAGAAGTATGATCCATGGTTCGAGCTCGAGATACTCCAATTCATGGATGAGGATGAATCGAGGAAGAAGAAATCGAGGAAGCGGAAGGAGGAGCAGAGGCTGTACGCAGAGCTGAGCGAGGCGATGGAGTGTCTGGAACACATATGCACGGAAGGGTGCACTGACGTTGGGCCTTACGGCGTGGAGCTCCGAAACGAGAGGAGGCCGTGCAGCAAATACGCCACGTGTCACGGTATTCAGCTCTTAATCACGCACTTCGCGAGGTGTAGCAAGAGGATGAACGGAGGGTGCTTACGCTGCAAGCGAATGTGGCAGCTCTTCCGACTTCATTCCTACATCTGCCAACAAACCCATTCTTGCAAGGTTCCTCTTTGCAGGGAGATGCAAATGAAAATGCAGCAAGTGAAAAGGAAAGATGATCCACTGTGGAAACTACTGGCGAGGAAAGTGACCTCTGCTAGAGTCATGTCTACACTCTCTTTGCCAAAGAGGAAGAGAGACGATGAAATTAGAATAAGCATGGACAACTACAGGATTAGAAGTTTCAAATTAAAACGATAA 1080 0.5009 MAVETIAPTGISPIAGIDYLSSRVLPEPDVFIHTSSGERIPAHTSILASVSPVLENIIDQPRRHRSSERIIQIHGVPCEAVTAFLGFLYCSRCTDEQMEKYGVHLLALSHVYLVPQLKQRCIKVLAERLTIENVVDLLQLARLCDAPDLYIKCMKLLTNHFKSVEATEGWKFLQKYDPWFELEILQFMDEDESRKKKSRKRKEEQRLYAELSEAMECLEHICTEGCTDVGPYGVELRNERRPCSKYATCHGIQLLITHFARCSKRMNGGCLRCKRMWQLFRLHSYICQQTHSCKVPLCREMQMKMQQVKRKDDPLWKLLARKVTSARVMSTLSLPKRKRDDEIRISMDNYRIRSFKLKR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00472 359 Gene3D - 130 202 - -
Accr12g00472 359 SUPERFAMILY TAZ domain 203 302 IPR035898 -
Accr12g00472 359 Coils Coil 194 221 - -
Accr12g00472 359 ProSiteProfiles BTB domain profile. 28 97 IPR000210 GO:0005515
Accr12g00472 359 Gene3D TAZ domain 203 309 IPR035898 -
Accr12g00472 359 FunFam BTB/POZ and TAZ domain-containing protein 2 130 200 - -
Accr12g00472 359 SMART BTB_4 28 129 IPR000210 GO:0005515
Accr12g00472 359 Pfam BTB/POZ domain 28 127 IPR000210 GO:0005515
Accr12g00472 359 SMART TAZ_2 205 299 IPR000197 -
Accr12g00472 359 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 27 339 IPR044513 -
Accr12g00472 359 SUPERFAMILY POZ domain 29 159 IPR011333 -
Accr12g00472 359 Gene3D Potassium Channel Kv1.1; Chain A 26 129 IPR011333 -
Accr12g00472 359 Pfam TAZ zinc finger 212 298 IPR000197 -
Accr12g00472 359 CDD BACK 130 173 - -
Accr12g00472 359 FunFam BTB/POZ and TAZ domain-containing protein 2 201 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00472 Accr-Chr12 4362655 4365529 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Accr12g00472 BTB 1.2e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00472 - - cam:101496955 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00472 12 4362655 4365529 Accr12g00472 12 4362655 4365529 ECH