Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00471 ATGACCACCTCTTTCCTCTCTCTGCTCTTCTTTCTCTCCTTTTTTATCTCCATAACCCTCATTTCCTCCAGACCCCTCCATGACCCAGAATTGGTAGTACAAGAAGTGAACAGGAAGATCAATGCTTCATCAATGGCGGCCAGGAGGAACTTGGGGTACCTATCCTGTGGTACAGGCAACCCCATTGACGATTGCTGGAGATGTGACCCTGACTGGGTGAACAACCGGCAGAAGCTGGCCGATTGTGCAATTGGGTTCGGTAAGAATGCTGTTGGGGGCAAGGACGGTGACATTTACGTGGTGACGGACTCCGGGGACGATGACCCGGTGAACCCGAAGCCGGGGACTCTCCGGTATGCGGTGATCCAAGACGAGCCGTTGTGGATCACATTTGCAAGAGACATGGTGATCCAGCTGAAAGAAGAGCTTATAATGAACTCGTTCAAGACCATCGACGGTAGAGGAGCGAGCGTACATATTGCGGGGGGTCCATGCATTACGATCCAGTTCGTGACCAACATTATAATCCACGGCATTAACATCCATGACTGTAAGCAAGGAGGTAACGCTATGGTGAGGGACTCCCCACGGCACTACGGGTGGAGGACGGTATCGGACGGTGACGGCGTGTCCATCTTCGGAGGGAGCCACGTGTGGGTCGACCATTGCTCCTTGTCGAACTGCAACGACGGTCTGATCGATGCAATTCATGGGTCCACCGCAATCACCATCTCGAACAATTATATGACCCACCATGACAAGGTCATGCTATTGGGTCACAGTGATTCTTATACAGAAGACAAGAACATGCAAGTCACTATAGCCTTTAATCATTTCGGAGAAGGCCTCGTTCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCACGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCCACCATCAACAGTCAAGGAAACAGATTTGTAGCACCCGATGACAGATTCAGCAAGGAGGTGACGAAGCATGAGGATGCGCCGGAGAGCGAGTGGCAGGGGTGGAATTGGAGGTCGGAAGGGGACTTGATGGTAAACGGTGCGTTTTTCACGGCTTCAGGGGCCGAAGCCTCGTCGAGCTATGCCAGGGCTTCAAGTCTAAGTGCGAGGCCTTCTTCACTTGTGGGAACGATAACCGGAGGTGCCGGTGTACTTAGCTGCCGGAAAGGTTCTAGTTGCTGA 1227 0.5175 MTTSFLSLLFFLSFFISITLISSRPLHDPELVVQEVNRKINASSMAARRNLGYLSCGTGNPIDDCWRCDPDWVNNRQKLADCAIGFGKNAVGGKDGDIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWITFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWQGWNWRSEGDLMVNGAFFTASGAEASSSYARASSLSARPSSLVGTITGGAGVLSCRKGSSC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00471 408 PANTHER PECTATE LYASE 18-RELATED 26 406 IPR045032 GO:0030570
Accr12g00471 408 Pfam Pectate lyase 145 325 IPR002022 -
Accr12g00471 408 SMART amb_all 134 331 IPR002022 -
Accr12g00471 408 Gene3D - 59 401 IPR012334 -
Accr12g00471 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Accr12g00471 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Accr12g00471 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Accr12g00471 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Accr12g00471 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Accr12g00471 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Accr12g00471 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Accr12g00471 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Accr12g00471 408 SUPERFAMILY Pectin lyase-like 48 402 IPR011050 -
Accr12g00471 408 FunFam Pectate lyase 59 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00471 Accr-Chr12 4351969 4353541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00471 1 408 Polysaccharide Lyase AT5G63180 79.612 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00471 K01728 - gmx:100101868 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00471 12 4351969 4353541 Accr12g00471 12 4351969 4353541 ECH