Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00469 ATGGATCCCTCTGAATCCGATTCAACAGCTGTTTCGAACCCCATCAAAGACCCAGAATTGGGCATTCACTCAGCTTCTTCTCTCCCCAGTTCCAATCATGATCCTGAACCGTCAGATCTCAATCCCAGGCATGAGACTGATCCCCTTCATGAAGACTTTCAGAACAAGCTGATTTTGAAGGAGAAGGATGCGGGGGCTGAAGAGGAAGAGGAGAAGAAAGATTCTGAATTAGATGATGCTAAAGAAGTAAGTGCTATAGCTGATACCGGAGAATCTGAGAAGGAACAAGTTTTTGATGAAGCTAACCAGGATTGGAACGGAAATGAGTACGATGGTTGGGGGGAGAATGTGAACGAAAGTGAGAATAATAATTTTGGTATAGATTATGTAACTGTCGGTGATGAAGTGGAGAAGAACGATGAGGAAAGTAGCGGTAGAGCACACCAGTACCCAGTGAGGCCAGAAGCTGAAGATTGTGCGTTCTATCTCAAGACTGGAACCTGCAAGTTTGGGTTCAACTGCAAGTTTAATCACCCCCTTAAGAGGAAAATCCAGGTTGTTAAGGAGAAAGGGAGAGACAGAGAAGAATCAGGGCAGACTGAATGCAAGTATTATCTAAAGTCAGGAGGTTGTAAATACGGAAAGGCTTGTAAATTTAACCACACTAGAGGAAAATGTTCAGCAACCACAATTTTGGAACTTAACTTTCTTGGCCTGCCGATTCGTCTGGGAGAGAAAGAGTGCCCATATTATATGCGTACCGGCTCCTGTAAGTTTGGTGCAAACTGCAAATTCAATCATCCTGATCCTACCATTGTTGGAGGAAGTGATCCTCCAACATATGCTAATGGTGGGGCTGTTCCTTTACAAGGAGTATCTCAGCCATCTGTACCCTCTTGGTCTTCTCCAAGAACATTAAATGAAACTGCTTCTTTTGTGCCAATGATACTTCCACCTGTTCAAGGGATTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCCGTCTACCTACCTGAGAGGACTGTGCACCCACCACCATCTACATACGTTGTGAACAATCCAGCTATTGAGACAAATGTCTATATGCCCCATCCAAAGCCGATGCAGGTCGATGAGTTTCCAGAAAGGCCTGGTGAACCAGAGTGCAGTTACTACCTAAAAACTGGGCATTGCAAATTTAGATTTAATTGTAGATTTCACCATCCAAAGAACCGTATTGCAAGACCACCATGCACCCTAAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGGGTGTCTGCTCGCACTATAGTCGCTATGGAATATGCAAATATGGGCCATCATGTAAGTTTGATCACCCAACAGACCTAACGCCGTCAAATATACCAGGACTTGATCAGGAATCCTCCTACACAAACTCTGCTAGTGTTGAAGTGGCAGAGATGGCTGGAAGTGGGAGTGCAGGTGACTCTCCAATTAAGCAGCCTGTTTAA 1479 0.4476 MDPSESDSTAVSNPIKDPELGIHSASSLPSSNHDPEPSDLNPRHETDPLHEDFQNKLILKEKDAGAEEEEEKKDSELDDAKEVSAIADTGESEKEQVFDEANQDWNGNEYDGWGENVNESENNNFGIDYVTVGDEVEKNDEESSGRAHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPLKRKIQVVKEKGRDREESGQTECKYYLKSGGCKYGKACKFNHTRGKCSATTILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTIVGGSDPPTYANGGAVPLQGVSQPSVPSWSSPRTLNETASFVPMILPPVQGISPQSSDWNGYQAPVYLPERTVHPPPSTYVVNNPAIETNVYMPHPKPMQVDEFPERPGEPECSYYLKTGHCKFRFNCRFHHPKNRIARPPCTLSDKGLPLRPDQGVCSHYSRYGICKYGPSCKFDHPTDLTPSNIPGLDQESSYTNSASVEVAEMAGSGSAGDSPIKQPV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00469 492 Gene3D - 423 473 - -
Accr12g00469 492 Gene3D - 345 417 - -
Accr12g00469 492 ProSiteProfiles Zinc finger C3H1-type profile. 378 406 IPR000571 GO:0046872
Accr12g00469 492 SMART c3hfinal6 196 223 IPR000571 GO:0046872
Accr12g00469 492 SMART c3hfinal6 242 269 IPR000571 GO:0046872
Accr12g00469 492 SMART c3hfinal6 378 405 IPR000571 GO:0046872
Accr12g00469 492 SMART c3hfinal6 425 450 IPR000571 GO:0046872
Accr12g00469 492 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Accr12g00469 492 MobiDBLite consensus disorder prediction 1 98 - -
Accr12g00469 492 ProSiteProfiles Zinc finger C3H1-type profile. 242 270 IPR000571 GO:0046872
Accr12g00469 492 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Accr12g00469 492 Gene3D - 188 272 - -
Accr12g00469 492 Pfam RNA-binding, Nab2-type zinc finger 384 404 - -
Accr12g00469 492 SUPERFAMILY CCCH zinc finger 152 181 IPR036855 GO:0046872
Accr12g00469 492 PANTHER PROTEIN PHOSPHATASE RELATED 48 466 - -
Accr12g00469 492 MobiDBLite consensus disorder prediction 37 69 - -
Accr12g00469 492 SUPERFAMILY CCCH zinc finger 200 225 IPR036855 GO:0046872
Accr12g00469 492 SUPERFAMILY CCCH zinc finger 243 270 IPR036855 GO:0046872
Accr12g00469 492 SUPERFAMILY CCCH zinc finger 421 449 IPR036855 GO:0046872
Accr12g00469 492 MobiDBLite consensus disorder prediction 76 98 - -
Accr12g00469 492 SUPERFAMILY CCCH zinc finger 383 407 IPR036855 GO:0046872
Accr12g00469 492 ProSiteProfiles Zinc finger C3H1-type profile. 423 451 IPR000571 GO:0046872
Accr12g00469 492 Gene3D - 117 187 - -
Accr12g00469 492 ProSiteProfiles Zinc finger C3H1-type profile. 196 224 IPR000571 GO:0046872
Accr12g00469 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 199 221 IPR000571 GO:0046872
Accr12g00469 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 428 449 IPR000571 GO:0046872
Accr12g00469 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 179 IPR000571 GO:0046872
Accr12g00469 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 268 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00469 Accr-Chr12 4331340 4334975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00469 150 452 C2H2 Transcription Factor Family AT3G02830 41.284 4.46e-76 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr12g00469 zf-CCCH 1.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00469 - - qsa:O6P43_030782 603.979