Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00410 ATGGATTGGAATTTGAAGGGTGGCTCTTGGGATTTGAGTGAATTAGATGGGGGAGGTTTACCCAACATAGAAACAAGGGTTGATAATTATAATATGGGGTCAACCAGATTTGGATTGATGAAGGGAAGTGGAGGCGAATTTTGTTTTGATTTGAAGCTAGGTCAGGTTGCCAGTTCTGGTACTGAACCATCATCAGGGGCCAAGTGGAAAGTGGCCAAAACGGCAGCGACGTCAGGCGCTTCAGGATCATCGAAGAGAGCTCGAGCAATTAACAATGGGATCCAATCGGCGTCGTGCCTGGTGGATGGGTGCAGTTCAGATCTGAGTAACTGTAGAGAGTACCATAGGCGTCACAAGGTGTGTGAACTTCATTCCAAGACTTCTGTGGTTACCATTGGAGGCCACAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGGAAGAGAAGTTGCAGGAAGCGATTAGATGGTCACAACCGACGGAGAAGAAAGCCCCAGCCTGTTCCCCTCACTCGTTCTGCTACTTTATTCTCCAATTACCACCAAGGGAGGCAGTTACTACCCTTCTCATCAGAGTCAAGTCCATATCCTTCAAGTTCTATGGTAAGCCCTGGTTCTGACTGGGAATGGGATGGTAGGACGATGGTTCATCATCATAATAATAATGATAACAGGCAGCAGCTATTTTTTGGGTCTTCTGAAAGCTCCAGAATTAAGCAGGAAATGACAACATATCTTGAGAAGCCATGTATTGAAGTTCTGGAGACGGGGACGGCCACGGCGAGGTCTGGCTCTTTCTCATCATCTCCTCCTCCGCCTTGTGCTCTCTCTCTTCTGTCATCACCGACGCCAGCACCTATGTACCTGTCATCGCAACCTCTAGCCACCGCCGCCCTCCATGATCATCACGGCCTACAAGAGGCTGTGGACACTACACTTCTGGTTAGCAACGGGAGTCATCAGCCTTCAATGTATAACTTGTTAGGGTCTGCTGCTTCCCATAATAGTAATTCTCAGTCACTCCCATTTCATTGGGAATAA 1065 0.4779 MDWNLKGGSWDLSELDGGGLPNIETRVDNYNMGSTRFGLMKGSGGEFCFDLKLGQVASSGTEPSSGAKWKVAKTAATSGASGSSKRARAINNGIQSASCLVDGCSSDLSNCREYHRRHKVCELHSKTSVVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPVPLTRSATLFSNYHQGRQLLPFSSESSPYPSSSMVSPGSDWEWDGRTMVHHHNNNDNRQQLFFGSSESSRIKQEMTTYLEKPCIEVLETGTATARSGSFSSSPPPPCALSLLSSPTPAPMYLSSQPLATAALHDHHGLQEAVDTTLLVSNGSHQPSMYNLLGSAASHNSNSQSLPFHWE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00410 354 FunFam Squamosa promoter-binding-like protein 14 90 160 - -
Accr12g00410 354 SUPERFAMILY SBT domain 98 175 IPR036893 GO:0003677|GO:0005634
Accr12g00410 354 Pfam SBP domain 99 172 IPR004333 GO:0003677
Accr12g00410 354 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 57 333 IPR044817 GO:0003677
Accr12g00410 354 Gene3D - 90 160 IPR036893 GO:0003677|GO:0005634
Accr12g00410 354 ProSiteProfiles Zinc finger SBP-type profile. 96 173 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00410 Accr-Chr12 3830004 3831499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00410 1 212 SBP-box Gene Family AT5G50670 52.466 3.94e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr12g00410 SBP 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00410 - - pcin:129320715 410.994