Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00386 ATGCCTTTTGAAATAATGAACCAGAGGGGCATATCTGCCTCGTCCCACCTTTTTGATGACAATTCCTTTTTTCCTGAGAGGAATGTTGGATTGCAGAAGCCAAAATCCTTTCATGACCATTATTTACAAGGGAAAATAGGAGCATCACCGCGAAGCATTTCAAATACATCATCATCTCTAGAAATGAGTGCAAGCTCTGGCTTGCCAATGTCACAAACAAGTCTGTCGGGAGAAGCTACAGAAAAGCTGCATGTTGCTGGAGGGGACATCATTGATGTGTTGAAGTCTACCAAGGAATCAATGAATCATCACCCCAGATCATGGTCTAATGTGCACATGCAGCCTGAATCTGCATCTTATAGTTTAACTGGCAAAAAGATTCTCACTGATACTACTTCTCATGAGAGCAGTCTATTCTCTAGCTCACTGTCTGAGATATTTAGTCAAAAATTGAGGTTAACTCGGAATGATATCCTGTCATGCCAACCTGTAACCATTGGTTCATTTCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATTGAGGCGGACACTATTGGGAATCTTCTTCCTGATGAAGATGATCTGTTTTCTGGTGTAACTGATGAGATAGGATACACTGCGAATGCCAGAACAAATGATGACTTTGAGGAGTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAACTTGAAGGGGATGAAAATCTAAGTATGGGAAAGAAAATTGGTTGTCTGGATGTAGATTCTGGTTATTTTGGAGGTTTTAAAGGAAAGCTTCCGTTTGGTGAACAACCTTCTAGAACACTTTTTGTTAGAAACATAAATAGCAATGTTGAAGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGAAATCCGAACCATTTATACGGCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTACTATGACCTAAGGTCAGCACAAAATGCAATGCAAGCACTTCAGAATAGGTCGTTGAGGTCTAGAAAACTTGACATTCATTACTCAATCCCCAAGGGCAACGCTCCTGAGAGGGATATAAGCCATGGTACACTAGTGCTATCTGGTCTTGATTCATCTGTTTCAAATGATGAGCTTCAGCATATTTTTGGATTTTATGGAGAAATAAAAGAAATCTATGAATCTCCAGAATTAAATTATAAAAAAATCATTGAATTTTATGATGCACGAGCTGCAGAAGCTGCTCTTCGAGCATTAAACAGGAGTGACATTGCTGGTAAGCAGATCAAGCTTGAACCTGGCCATCCTCGGGGAACAACATGTCTGACGAATGAATCTCACAATGGCCAAGATGAACCTGATTTTGGTCAAGGTCTCTGTGACAACTTATCACTAAGACAGAAAGCAACAATGTCTTCTGGAGTAATTGCATCTGGCTGCTTAGAAAACGGACCTAATCCAGGATTTCGCTCTGCAATACAGCAACCTATTAATGCATTAGTTGATAATGCTTTCTCTCCTGTAAATTCTAGCATCCACAAATCAGTGAGAGGGCCAACATCTGGAAAAGTGCCCAGCCTCGATGCAATGAAATTTTCCCCTGTTCCAAGATTTCATCCTCATTCCCTCCCTGACTATCATGATAGCTTTGCTAGTGGTAGTGCTTACAACTTTTCAAGCATTGTTGGCAATGTGGCTGGCAACATTGGTACTGCAGGGACAGACAGCTCAGATAGCAGGCACAATCAGGGAATAGGTTCAACTGGGAATCTGATGGAATTTACTGGAGCAGGAAATGTTAACCATAAACGTCATGGGCTTTATCATATGTGGAACAACTCCAATTTGCATCAGGAACCTTCACCAAATCCCATGCTTTGGCAGAAAACATCATCATTTCTTAACGGTGCTTGTGCTCCTGGCCTTCCACAAATGCCTGGCTTTCCTAGAACACAGACTCACATGCTGAGAGCATCACATATGGACCATCATGTTGGGTCAGCTCCTGTTAATGCCTCGCCCTGGGACAGGCAGCACGCATATTTAGGAGTATCTCCTGAAACTTCTGGTTTTCATATGGGTTCTCTAGGAAGTGCTGGTTTGCCTGGTAGCTGGCAAATGCATCCTCCAGAATTTACATCTCACAGCATGTTCCCTCATATTGGTGGGAATGGTGCAGAATTGACGCCAACTGCTGGGCAAAACTCTCCTAATCAGTTGTCACATGTTTTCCCTGGGAGGCATCCCATGACTTCTATGTCCAAACTTGATCCCAATGAACGAATGAGGAATCTGTATCCCCTCCGGAAAAGTGAAGCTAACTCTAATAATGCTGATAAAAAGCAATATGAACTTGACCTAGGCAGCATAATGCGTGGGGAAGACAGCCGAACAACTCTCATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGCCGGGGAACTTATGATTTTCTATATTTGCCTATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTTATTAATATGATTGATCCTGCTCAGATTGTTCCATTCCACCAGGCTTTTAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGTAAAACCGCACTTATAGCTCACTTCCAGAATTCAAGCCTGATGAATGAAGACAAGCGTTGCCGTCCTATTCTGTTCCACACAGATGGCCCGAATGCTGGTGATCCGGAGCCCTTCCCCATGGGTACTAACATTAGGATGAGGCCTGGGAAATCTCGCAGCAGTGGTAATAATGAGGAGAATCGCAGCCAGGGAAGTCCTTCAACTTTGGCAAGCGGAGAGGGATCTAATACTAATGGGATGGATTCTTTGTTGAGCTCTTCGCGGAATTCTGACTGA 2895 0.4231 MPFEIMNQRGISASSHLFDDNSFFPERNVGLQKPKSFHDHYLQGKIGASPRSISNTSSSLEMSASSGLPMSQTSLSGEATEKLHVAGGDIIDVLKSTKESMNHHPRSWSNVHMQPESASYSLTGKKILTDTTSHESSLFSSSLSEIFSQKLRLTRNDILSCQPVTIGSFPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTDEIGYTANARTNDDFEEFDLFSSGGGMELEGDENLSMGKKIGCLDVDSGYFGGFKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGEIRTIYTACKHRGFVMISYYDLRSAQNAMQALQNRSLRSRKLDIHYSIPKGNAPERDISHGTLVLSGLDSSVSNDELQHIFGFYGEIKEIYESPELNYKKIIEFYDARAAEAALRALNRSDIAGKQIKLEPGHPRGTTCLTNESHNGQDEPDFGQGLCDNLSLRQKATMSSGVIASGCLENGPNPGFRSAIQQPINALVDNAFSPVNSSIHKSVRGPTSGKVPSLDAMKFSPVPRFHPHSLPDYHDSFASGSAYNFSSIVGNVAGNIGTAGTDSSDSRHNQGIGSTGNLMEFTGAGNVNHKRHGLYHMWNNSNLHQEPSPNPMLWQKTSSFLNGACAPGLPQMPGFPRTQTHMLRASHMDHHVGSAPVNASPWDRQHAYLGVSPETSGFHMGSLGSAGLPGSWQMHPPEFTSHSMFPHIGGNGAELTPTAGQNSPNQLSHVFPGRHPMTSMSKLDPNERMRNLYPLRKSEANSNNADKKQYELDLGSIMRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIVPFHQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRMRPGKSRSSGNNEENRSQGSPSTLASGEGSNTNGMDSLLSSSRNSD 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00386 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 340 IPR000504 GO:0003723
Accr12g00386 964 CDD RRM1_MEI2_like 266 341 IPR034453 -
Accr12g00386 964 Gene3D - 344 430 IPR012677 -
Accr12g00386 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Accr12g00386 964 MobiDBLite consensus disorder prediction 48 73 - -
Accr12g00386 964 CDD RRM3_MEI2_like 789 874 IPR034454 -
Accr12g00386 964 SMART rrm1_1 268 336 IPR000504 GO:0003723
Accr12g00386 964 SMART rrm1_1 353 421 IPR000504 GO:0003723
Accr12g00386 964 SMART rrm1_1 788 864 IPR000504 GO:0003723
Accr12g00386 964 FunFam MEI2-like protein 5 isoform 2 256 350 - -
Accr12g00386 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 77 947 - -
Accr12g00386 964 MobiDBLite consensus disorder prediction 920 964 - -
Accr12g00386 964 Pfam RNA recognition motif 2 786 882 IPR007201 -
Accr12g00386 964 MobiDBLite consensus disorder prediction 897 964 - -
Accr12g00386 964 FunFam Protein MEI2-like 1 351 445 - -
Accr12g00386 964 Gene3D - 261 343 IPR012677 -
Accr12g00386 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 419 IPR000504 GO:0003723
Accr12g00386 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 333 IPR000504 GO:0003723
Accr12g00386 964 SUPERFAMILY RNA-binding domain, RBD 264 426 IPR035979 GO:0003676
Accr12g00386 964 SUPERFAMILY RNA-binding domain, RBD 788 872 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00386 Accr-Chr12 3609819 3615590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00386 262 378 Eukaryotic Initiation Factors Gene Family AT3G16380 26.866 1.13e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00386 - - gmx:100797616 1350.11