Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00380 ATGGGATCAACAGAGGTACCGATCAAGGGAAATCGCGTGGACGGTACGGGGGGAAGCCACTCCTCTGTTTACAACAACCATAACGATGCTTGGAAACCTGCAGAGTGTCAGAATGCTCACCCATCGTCAACTGTGAGAGACCCGGAAGCAGCGCTCTACTCGGAGCTATGGCATGCTTGTGCTGGTCCCCTCGTTACAGTGCCCCGTGAAGGGGAACGGGTCTTCTATTTTCCTCAGGGACATATTGAGCAAGTGGAGGCGTCCACAAATCAAGTGGCGGACCAGCATATGCCTGTGTACGATCTCCCATCGAAAATCCTTTGTCGAGTGATCAACGTGTTGTTGAAGGCTGAGCCGGACACCGACGAGGTGTTTGCCCAGGTGACTTTGCTTCCGGAGGCTAATCAAGATGAAAACGCCGTTGAGAAAAAGGCACCGCCTCCTCCACCGCCACGATTTCAGGTGCATTCGTTCTGTAAAACTCTGACGGCCTCTGATACAAGCACTCATGGTGGATTTTCTGTACTGAGACGTCACGCCGATGAATGCCTTCCTCCTCTGGATATGTCGAAGCAGCCACCTAACCAGGAGTTGGTGGCGAAGGATCTACTCGGTAACGAGTGGAGATTCCGGCATATCTTTAGAGGTCAACCACGCAGACATTTACTACAAAGTGGTTGGAGTGTTTTTGTCGGCTCTAAGAGGCTTATTGCTGGTGATGCATTTATATTTTTGAGGGGTGAGAATGGGGAACTTCGTGTTGGTGTGAGACGTGCAATGAGACATCAGGGCAATGTTCCGTCCTCAGTGATCTCTTGTCACAGCATGCATCTTGGAGTCCTTGCAACTGCATGGCATGCGGTTTCGACTGGAACCATGTTCACTCTGTATTACAAGCCCAGAACCAGTCCTGCCGAATTCATTGTTCCTTACGAACAATATATGGAGTCCCTGAAGAATAATTATACAATAGGAATGCGGTTCAAAATGAGGTTTGAAGGTGACGAGGCTCCAGAGCAGAGGTTTACTGGTACTGTTATTGGACTTGAAGATGCTGATCCACAAAGGTGGCCAAAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCGAGCATTCCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAACCTTCTCATGCTCCTCCAGCTCTAAATCCTCTTACACTGGCCAGGCCTAAAAGGCCTCGGGCTAATGCGATTCCATCATCACCTGATTCGTCTGTTCTCACTCGTGAAGTGTCATCTAAGGTAAGTATAGACCCTTTGCCAGCAAGTGGATTTCCAAGGGTATTGCGAGGTCAAGAATTCTCAACCTTGAGAAACAATTTGGCGGAAAGCTATGAATCTGATACTGCCGAAAAGCCTGATGAAAAAAATGCAGTGTCTACTTCAAGTACGTTTGCTCCGGAGAGCTGGACACCAACAGGGAGGCATGAGCCTTCATATTCAGACTTGCTTTCAGGCTTTGGGACAAATGGAGATCGAAACCATCTATCCTTGGTACATCAAACTAGCCCTATGGCTAGTCCTGGAAGGAAACATTTGTTAAGTCATGAAGGCAAGTTTAATGTGGTAGCCTGCCCAAGGCATGTAATGCCTTCTAGTCTATCATTAAACCTCTTGGACCCTAACACGAAAGGTTCACAAGACAGTGATGTAGGTTACCATGGTAGGTGGAATGTGAGGTATGGCGCATATGGTGATTATCCTGTGCTTTCTGCTCAGAAAGAAGAGCATAGGAGGCATGGAAGCCTGTTGATGCCACCGCCTCCACCCCCAACTCAACATGATAGTCCTGGATCAAGAGACCCGATGCAAAAACCAACACAGGCAAGATCATGCGAGACTGTTAAAGCAAAAGAAGGGGACTGTAAGCTATTTGGCATCTCACTTATCAGTGGCCCAAGTACACCAGAGCCTTCCACATCAAAAATAAATACGGCATGTAAGCCAGCTGGTCCCAAGCATCTTACATCACAGCAACCTGATACCAATGAAAGTGATTTGAAATCAGAACAATCAAGTGGATCAAAGCTGCCGGATGCTGTTGTTGCTACCGATGACCATGAAAAACCATCACAAGCATTTCAGCCACATATGAAAGGTGTTCAAGCCATACCACGCAGTGATTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTTGGTAGGTCGGTTGACCTTACAAAGTTCAGCAACTATGATGAATTAATCGCTGAATTAGATGATTTGTTTGAATTTGGAGGGGAATTAAGGTCTTTGAAAAAGGATTGGCTAATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGGGATGATCCGTGGCAGGAGTTCTGTGCCATGGTTCGCAAAATATATATCTACCCCAAAGAGGAAATTCAGAAAATGAGCCCAGGCACACTAAGGTCTGTGGTTGAGGAGAATCTGTCAACTGGTGAAGGCTGGATGGATGCTAAAGAAGTCTAA 2514 0.4706 MGSTEVPIKGNRVDGTGGSHSSVYNNHNDAWKPAECQNAHPSSTVRDPEAALYSELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVLLKAEPDTDEVFAQVTLLPEANQDENAVEKKAPPPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPNQELVAKDLLGNEWRFRHIFRGQPRRHLLQSGWSVFVGSKRLIAGDAFIFLRGENGELRVGVRRAMRHQGNVPSSVISCHSMHLGVLATAWHAVSTGTMFTLYYKPRTSPAEFIVPYEQYMESLKNNYTIGMRFKMRFEGDEAPEQRFTGTVIGLEDADPQRWPKSKWRCLKVRWDETSSIPRPERVSPWKIEPSHAPPALNPLTLARPKRPRANAIPSSPDSSVLTREVSSKVSIDPLPASGFPRVLRGQEFSTLRNNLAESYESDTAEKPDEKNAVSTSSTFAPESWTPTGRHEPSYSDLLSGFGTNGDRNHLSLVHQTSPMASPGRKHLLSHEGKFNVVACPRHVMPSSLSLNLLDPNTKGSQDSDVGYHGRWNVRYGAYGDYPVLSAQKEEHRRHGSLLMPPPPPPTQHDSPGSRDPMQKPTQARSCETVKAKEGDCKLFGISLISGPSTPEPSTSKINTACKPAGPKHLTSQQPDTNESDLKSEQSSGSKLPDAVVATDDHEKPSQAFQPHMKGVQAIPRSDSARSCTKVHKKGIALGRSVDLTKFSNYDELIAELDDLFEFGGELRSLKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLRSVVEENLSTGEGWMDAKEV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00380 837 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Accr12g00380 837 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 813 IPR044835 GO:0003677|GO:0006355|GO:0009725
Accr12g00380 837 Gene3D - 719 813 - -
Accr12g00380 837 FunFam Auxin response factor 156 260 - -
Accr12g00380 837 FunFam Auxin response factor 719 813 - -
Accr12g00380 837 MobiDBLite consensus disorder prediction 641 705 - -
Accr12g00380 837 MobiDBLite consensus disorder prediction 457 491 - -
Accr12g00380 837 SUPERFAMILY CAD & PB1 domains 726 801 - -
Accr12g00380 837 ProSiteProfiles PB1 domain profile. 724 806 IPR000270 GO:0005515
Accr12g00380 837 SUPERFAMILY DNA-binding pseudobarrel domain 155 287 IPR015300 -
Accr12g00380 837 SMART B3_2 158 260 IPR003340 GO:0003677
Accr12g00380 837 MobiDBLite consensus disorder prediction 587 628 - -
Accr12g00380 837 MobiDBLite consensus disorder prediction 469 491 - -
Accr12g00380 837 FunFam Auxin response factor 321 393 - -
Accr12g00380 837 MobiDBLite consensus disorder prediction 1 26 - -
Accr12g00380 837 Pfam AUX/IAA family 770 811 IPR033389 -
Accr12g00380 837 Gene3D - 155 260 IPR015300 -
Accr12g00380 837 MobiDBLite consensus disorder prediction 610 624 - -
Accr12g00380 837 MobiDBLite consensus disorder prediction 380 400 - -
Accr12g00380 837 CDD B3_DNA 156 258 IPR003340 GO:0003677
Accr12g00380 837 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Accr12g00380 837 Gene3D - 321 392 - -
Accr12g00380 837 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Accr12g00380 837 MobiDBLite consensus disorder prediction 645 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00380 Accr-Chr12 3495036 3499252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00380 1 837 B3 DNA Binding Superfamily AT5G62000 61.316 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Accr12g00380 B3 1.1e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00380 - - gmx:100815956 1176.39