Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00372 ATGGCAGCTTTTTCATTCCAATACCACCCTTTCCTTGTTGACAATCCATTTTTCTCTAGTGCTCCCATTAAGATGACAGCTTTCACTGAGCAGCAACAGCCTCCTCAGATTCATGAGTCATCTTTTGAGAATTGCTTCGTTGTTGATCAAGGCTCCAAGTTTAACATGAGTGATAATGAGCCTTCTTCTGTGACTAAAAACCAGCAGAGTCCTGAGACCTCTCTGGTATTGGATAAGCTTGAAACTGATGGTGAGCAGGTCACTCAGAAGGTGACTCCTACGGAGAAGAAGAAGAGAAACAGGAGTAATCGTTCTTCTTCCTTGACTCGTCCTCAATCCAAGGAATCTACAGGAGCAAGAAACAAGAGACAAAAGAAGAGCAATAATGGTGAGTTGAAGGAAGGAGATAAGTCAATAGATGAGAAGAAGAATCAGAAGAAGAGTCATGAAGAACCTCCAACAGGTTATATCCATGTAAGAGCAAGAAGGGGTCAGGCAACTGATAGCCATAGCCTAGCTGAAAGGGCAAGAAGAGAGAAGATAAGTGAGAGGATGAAGATGTTGCAGCGACTTGTGCCAGGTTGTGACAAGGTGACTGGAAAAGCCCTCATGTTGGATGAAATAATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTTTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTTTATGACTTCACAATGGACATTGACTCTCTCATGGTCAGACCAGAGAAATCAAATTGCTTACCATCACCACTTCCATCTGTGCAACAGTGCAGCAGCCTCAACCAGGCCACAACCACCGTTACCGCCACGGCCGCCGGCTTTCCCACTGCTAATGACTATCCTTGGGACAATTCAGCTGCTTTTATCCTTCAAGGACAGAGGTCTAATGTCTTATCTGAGGACACAGCTAGTCAATTCTGGGACATAGAAGACCCACGCCAAAAGTTTCTTCATCCATATGGGATCAACAGCAACAGCTTAAGTTTCTTTCATTCACAATAA 1020 0.4353 MAAFSFQYHPFLVDNPFFSSAPIKMTAFTEQQQPPQIHESSFENCFVVDQGSKFNMSDNEPSSVTKNQQSPETSLVLDKLETDGEQVTQKVTPTEKKKRNRSNRSSSLTRPQSKESTGARNKRQKKSNNGELKEGDKSIDEKKNQKKSHEEPPTGYIHVRARRGQATDSHSLAERARREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDFTMDIDSLMVRPEKSNCLPSPLPSVQQCSSLNQATTTVTATAAGFPTANDYPWDNSAAFILQGQRSNVLSEDTASQFWDIEDPRQKFLHPYGINSNSLSFFHSQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00372 339 MobiDBLite consensus disorder prediction 52 76 - -
Accr12g00372 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
Accr12g00372 339 MobiDBLite consensus disorder prediction 52 177 - -
Accr12g00372 339 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 49 270 IPR024097 GO:0006355
Accr12g00372 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 232 IPR036638 GO:0046983
Accr12g00372 339 FunFam Basic helix-loop-helix transcription factor 162 234 - -
Accr12g00372 339 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Accr12g00372 339 SMART finulus 171 221 IPR011598 GO:0046983
Accr12g00372 339 CDD bHLH_AtBPE_like 155 240 - -
Accr12g00372 339 MobiDBLite consensus disorder prediction 116 177 - -
Accr12g00372 339 Gene3D - 162 234 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00372 Accr-Chr12 3415370 3417160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00372 1 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.322 3.01e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr12g00372 HLH 9.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00372 - - gmx:100806696 378.637