Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00371 ATGGCAGCTTTTTCATTCCAATACCACCCTTTCCTTGTTGACAATCCATTTTTCTCTAGTGCTCCCATTAAGATGACAGCTTTCACTGAGCAGCAACAGCCTCCTCAGATTCATGAGTCATCTTTTGAGAATTGCTTCGTTGTTGATCAAGGCTCCAAGTTTAACATGAGTGATAATGAGCCTTCTTCTGTGACTAAAAACCAGCAGAGTCCTGAGACCTCTCTGGTATTGGATAAGCTTGAAACTGATGGTGAGCAGGTCACTCAGAAGGTGACTCCTACGGAGAAGAAGAAGAGAAACAGGAGTAATCGTTCTTCTTCCTTGACTCGTCCTCAATCCAAGGAATCTACAGGAGCAAGAAACAAGAGACAAAAGAAGAGCAATAATGGTGAGTTGAAGGAAGGAGATAAGTCAATAGATGAGAAGAAGAATCAGAAGAAGAGTCATGAAGAACCTCCAACAGGTTATATCCATGTAAGAGCAAGAAGGGGTCAGGCAACTGATAGCCATAGCCTAGCTGAAAGGGCAAGAAGAGAGAAGATAAGTGAGAGGATGAAGATGTTGCAGCGACTTGTGCCAGGTTGTGACAAGGTGACTGGAAAAGCCCTCATGTTGGATGAAATAATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTTTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTTTATGACTTCACAATGGACATTGACTCTCTCATGGTCAGACCAGAGTGCAGCAGCCTCAACCAGGCCACAACCACCGTTACCGCCACGGCCGCCGGCTTTCCCACTGCTAATGACTATCCTTGGGACAATTCAGCTGCTTTTATCCTTCAAGGACAGAGGTCTAATGTCTTATCTGAGGACACAGCTAGTCAATTCTGGGACATAGAAGACCCACGCCAAAAGTTTCTTCATCCATATGGGATCAACAGCAACAGCTTAAGTTTCTTTCATTCACAATAA 978 0.4366 MAAFSFQYHPFLVDNPFFSSAPIKMTAFTEQQQPPQIHESSFENCFVVDQGSKFNMSDNEPSSVTKNQQSPETSLVLDKLETDGEQVTQKVTPTEKKKRNRSNRSSSLTRPQSKESTGARNKRQKKSNNGELKEGDKSIDEKKNQKKSHEEPPTGYIHVRARRGQATDSHSLAERARREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDFTMDIDSLMVRPECSSLNQATTTVTATAAGFPTANDYPWDNSAAFILQGQRSNVLSEDTASQFWDIEDPRQKFLHPYGINSNSLSFFHSQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00371 325 MobiDBLite consensus disorder prediction 52 76 - -
Accr12g00371 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
Accr12g00371 325 MobiDBLite consensus disorder prediction 52 177 - -
Accr12g00371 325 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 49 258 IPR024097 GO:0006355
Accr12g00371 325 Gene3D - 162 234 IPR036638 GO:0046983
Accr12g00371 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 232 IPR036638 GO:0046983
Accr12g00371 325 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Accr12g00371 325 SMART finulus 171 221 IPR011598 GO:0046983
Accr12g00371 325 CDD bHLH_AtBPE_like 155 240 - -
Accr12g00371 325 MobiDBLite consensus disorder prediction 116 177 - -
Accr12g00371 325 FunFam Basic helix-loop-helix transcription factor 162 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00371 Accr-Chr12 3415370 3417160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00371 1 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.643 2.80e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr12g00371 HLH 9.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00371 - - gmx:100806696 356.295