LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr12g00321	ATGTCTCCAGCTTGTGAACATTCCTCGGAGATCAGAGAGGCTCATATTCCACCAAATCAGATGAACAGGTGGCTGGTATTCTTGGCCATCTTAGGACTCAGCTGTGCAACTACTGGTCCTGATGTGGAAGGTGAAGCTTTGTTAGATTTTTTGAAGGTCCTCAATGATTCCAACCATCAGATAACAGATTGGAATAGTTTTCTTGTGAGCCCTTGCTTTAGCTGGTCTCATGTCACATGCAGAGATGGACATGTCATATCTCTGAGCTTGGGTTCAAAAGGATTTTCTGGAACACTCTCTCCTTCAATTACCAACTTGAAATACTTGATTACCTTGGAATTGCAGAACAATAGCCTTTCAGGCTTCTTACCTGATTATATTGCCAATCTGACACGCCTGCAATATCTAAATCTTGCTGACAATAATTTCAATGGTTCTATGCCATCTACATGGGGTCAACTTTCCTCCCTGAGGACTCTGGTATTGAGAGGGAATGACTTGTCTGGATCTATACCCAATTCTTTTGAAAATCTTAGTGGGTTATCGGAATTGGATCTTTCTTCTAATAAGTTAAGCGGAACCATCCCAAAGCACCTCTTTTCAGTTCCAATCTTCAACTATTCAGATACAGAACTTCATTGTGACTCTAGCTTGGAGCAGCCTTGTGTTTCTAATTCAGCTATACCAGCTTCAACCAACAAATCAAAACTTGCAGTGGCTTTAGGTTGGGCAAGTTGTGGTGCCTTTGGAATTTTGTGTCTAGGGACCATCCTTACATATGCATACCAATACATTCAAAGACACAAAAATGATGTTTTTGTTGATGTTTCAGGTGAAGATGAGAGCAAGGTCTCATTTGGGCAACTGAGAAGATTTTCTTTGCGTGAACTTCATCTAGCTACAAACAATTTCAATGAGGGCAACGTGATTGGCCAAGGAGGCTTTGGAAAAGTATACAAAGGAGCACTCTCGGACAATACAAAGATTGCAGTAAAACGCTTGGCTGATTATCATAATCCTGGTGGAGAAGCTGCCTTTCAAAGAGAAGTTCAACTTATAAGCGTTGCAGTTCATAGAAATCTCCTGCGTTTGATTGGCTTCTGTACAACCTCAACCGAAAGAATCCTCGTATATCCTTTCATGGAAAATCGAAGTGTCGCATATCGTTTGAGAGATTTGAAACCTGAAGAGCAAAGTCTGGACTGGCCAACAAGGAAACGTATAGCATTTGGTACAGCACATGGGTTGGAGTATTTGCACGAGCAGTGTAATCCTAAGATAATACACCGTGATTTGAAGGCGGCGAATATCCTATTAGATGATGAATTTGAAGCAGTTCTTGGAGATTTTGGGCTGGCTAAGCTGGTTGACACTAGACTGACTAGTGTTACCACTCAAGTGAGGGGTACAATGGGACATATAGCCCCAGAATACTTGTCCACAGGAAAATCATCAGAAAAAACCGATGTCTTTGGATATGGAATAACACTTCTTGAGATTGTGACAGGTCAACGAGCAATCGACTTCTCGAGGCTTGAAGAGGAGGAGGATGTTCTTCTGCTAGATCATATTAAGAAGCTGCTGAAAGAGAAGAGGATAAAGGATATAGTGGACAAGAATTTGGAGAGTTATGATGCAAAGGACGTGGAGAGGATTATTCAGGTGGCGTTGCTTTGCACGCAAGCCGCACCGGAGGATCGGCCAAGCATGTCAGAGGTGGTGAATTTGCTGATTGGGGAAGGTTTGGCAGAGAGATGGGCTGAGTGGGAGCTAATGGACGAGATGGACAATAGAGAAATGTCACTGTTGGATCACCAATTTGCTTGGGCTGATGAATCTACGCATGATCAAGAGGCTATTCAGCTTTCCTGGGCAAGATAA	1881	0.4258	MSPACEHSSEIREAHIPPNQMNRWLVFLAILGLSCATTGPDVEGEALLDFLKVLNDSNHQITDWNSFLVSPCFSWSHVTCRDGHVISLSLGSKGFSGTLSPSITNLKYLITLELQNNSLSGFLPDYIANLTRLQYLNLADNNFNGSMPSTWGQLSSLRTLVLRGNDLSGSIPNSFENLSGLSELDLSSNKLSGTIPKHLFSVPIFNYSDTELHCDSSLEQPCVSNSAIPASTNKSKLAVALGWASCGAFGILCLGTILTYAYQYIQRHKNDVFVDVSGEDESKVSFGQLRRFSLRELHLATNNFNEGNVIGQGGFGKVYKGALSDNTKIAVKRLADYHNPGGEAAFQREVQLISVAVHRNLLRLIGFCTTSTERILVYPFMENRSVAYRLRDLKPEEQSLDWPTRKRIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRLTSVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLEIVTGQRAIDFSRLEEEEDVLLLDHIKKLLKEKRIKDIVDKNLESYDAKDVERIIQVALLCTQAAPEDRPSMSEVVNLLIGEGLAERWAEWELMDEMDNREMSLLDHQFAWADESTHDQEAIQLSWAR	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr12g00321	626	SUPERFAMILY	Protein kinase-like (PK-like)	282	577	IPR011009	-
	Accr12g00321	626	SMART	serkin_6	304	577	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g00321	626	SMART	LRR_typ_2	130	153	IPR003591	-
	Accr12g00321	626	SMART	LRR_typ_2	178	202	IPR003591	-
	Accr12g00321	626	SMART	LRR_typ_2	154	177	IPR003591	-
	Accr12g00321	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	427	439	IPR008271	GO:0004672\|GO:0006468
	Accr12g00321	626	ProSiteProfiles	Protein kinase domain profile.	304	587	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g00321	626	Pfam	Protein kinase domain	305	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g00321	626	ProSitePatterns	Protein kinases ATP-binding region signature.	310	332	IPR017441	GO:0005524
	Accr12g00321	626	Pfam	Leucine rich repeat	151	191	IPR001611	GO:0005515
	Accr12g00321	626	Gene3D	Phosphorylase Kinase; domain 1	273	380	-	-
	Accr12g00321	626	Gene3D	Ribonuclease Inhibitor	40	224	IPR032675	-
	Accr12g00321	626	FunFam	Leucine-rich repeat receptor-like protein kinase	40	197	-	-
	Accr12g00321	626	FunFam	Somatic embryogenesis receptor kinase 1	273	380	-	-
	Accr12g00321	626	FunFam	Somatic embryogenesis receptor-like kinase 1	381	597	-	-
	Accr12g00321	626	Gene3D	Transferase(Phosphotransferase) domain 1	381	596	-	-
	Accr12g00321	626	SUPERFAMILY	L domain-like	43	306	-	-
	Accr12g00321	626	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	25	588	-	-
	Accr12g00321	626	Pfam	Leucine rich repeat N-terminal domain	42	80	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr12g00321	Accr-Chr12	3012697	3016016	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr12g00321	25	626	Receptor kinase-like Gene Family	AT5G10290	57.166	0.0	665

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Accr12g00321		Pkinase	6e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr12g00321	-		-	pcin:129307818	923.694