Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00320 ATGTCTCCAGCTTGTGAACATTCCTCGGAGATCAGAGAGGCTCATATTCCACCAAATCAGATGAACAGGTGGCTGGTATTCTTGGCCATCTTAGGACTCAGCTGTGCAACTACTGGTCCTGATGTGGAAGGTGAAGCTTTGTTAGATTTTTTGAAGGTCCTCAATGATTCCAACCATCAGATAACAGATTGGAATAGTTTTCTTGTGAGCCCTTGCTTTAGCTGGTCTCATGTCACATGCAGAGATGGACATGTCATATCTCTGAGCTTGGGTTCAAAAGGATTTTCTGGAACACTCTCTCCTTCAATTACCAACTTGAAATACTTGATTACCTTGGAATTGCAGAACAATAGCCTTTCAGGCTTCTTACCTGATTATATTGCCAATCTGACACGCCTGCAATATCTAAATCTTGCTGACAATAATTTCAATGGTTCTATGCCATCTACATGGGGTCAACTTTCCTCCCTGAGGACTCTGGATCTTTCTTCTAATAAGTTAAGCGGAACCATCCCAAAGCACCTCTTTTCAGTTCCAATCTTCAACTATTCAGATACAGAACTTCATTGTGACTCTAGCTTGGAGCAGCCTTGTGTTTCTAATTCAGCTATACCAGCTTCAACCAACAAATCAAAACTTGCAGTGGCTTTAGGTTGGGCAAGTTGTGGTGCCTTTGGAATTTTGTGTCTAGGGACCATCCTTACATATGCATACCAATACATTCAAAGACACAAAAATGATGTTTTTGTTGATGTTTCAGGTGAAGATGAGAGCAAGGTCTCATTTGGGCAACTGAGAAGATTTTCTTTGCGTGAACTTCATCTAGCTACAAACAATTTCAATGAGGGCAACGTGATTGGCCAAGGAGGCTTTGGAAAAGTATACAAAGGAGCACTCTCGGACAATACAAAGATTGCAGTAAAACGCTTGGCTGATTATCATAATCCTGGTGGAGAAGCTGCCTTTCAAAGAGAAGTTCAACTTATAAGCGTTGCAGTTCATAGAAATCTCCTGCGTTTGATTGGCTTCTGTACAACCTCAACCGAAAGAATCCTCGTATATCCTTTCATGGAAAATCGAAGTGTCGCATATCGTTTGAGAGATTTGAAACCTGAAGAGCAAAGTCTGGACTGGCCAACAAGGAAACGTATAGCATTTGGTACAGCACATGGGTTGGAGTATTTGCACGAGCAGTGTAATCCTAAGATAATACACCGTGATTTGAAGGCGGCGAATATCCTATTAGATGATGAATTTGAAGCAGTTCTTGGAGATTTTGGGCTGGCTAAGCTGGTTGACACTAGACTGACTAGTGTTACCACTCAAGTGAGGGGTACAATGGGACATATAGCCCCAGAATACTTGTCCACAGGAAAATCATCAGAAAAAACCGATGTCTTTGGATATGGAATAACACTTCTTGAGATTGTGACAGGTCAACGAGCAATCGACTTCTCGAGGCTTGAAGAGGAGGAGGATGTTCTTCTGCTAGATCATATTAAGAAGCTGCTGAAAGAGAAGAGGATAAAGGATATAGTGGACAAGAATTTGGAGAGTTATGATGCAAAGGACGTGGAGAGGATTATTCAGGTGGCGTTGCTTTGCACGCAAGCCGCACCGGAGGATCGGCCAAGCATGTCAGAGGTGGTGAATTTGCTGATTGGGGAAGGTTTGGCAGAGAGATGGGCTGAGTGGGAGCTAATGGACGAGATGGACAATAGAGAAATGTCACTGTTGGATCACCAATTTGCTTGGGCTGATGAATCTACGCATGATCAAGAGGCTATTCAGCTTTCCTGGGCAAGATAA 1809 0.4279 MSPACEHSSEIREAHIPPNQMNRWLVFLAILGLSCATTGPDVEGEALLDFLKVLNDSNHQITDWNSFLVSPCFSWSHVTCRDGHVISLSLGSKGFSGTLSPSITNLKYLITLELQNNSLSGFLPDYIANLTRLQYLNLADNNFNGSMPSTWGQLSSLRTLDLSSNKLSGTIPKHLFSVPIFNYSDTELHCDSSLEQPCVSNSAIPASTNKSKLAVALGWASCGAFGILCLGTILTYAYQYIQRHKNDVFVDVSGEDESKVSFGQLRRFSLRELHLATNNFNEGNVIGQGGFGKVYKGALSDNTKIAVKRLADYHNPGGEAAFQREVQLISVAVHRNLLRLIGFCTTSTERILVYPFMENRSVAYRLRDLKPEEQSLDWPTRKRIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRLTSVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLEIVTGQRAIDFSRLEEEEDVLLLDHIKKLLKEKRIKDIVDKNLESYDAKDVERIIQVALLCTQAAPEDRPSMSEVVNLLIGEGLAERWAEWELMDEMDNREMSLLDHQFAWADESTHDQEAIQLSWAR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00320 602 Gene3D Transferase(Phosphotransferase) domain 1 357 572 - -
Accr12g00320 602 Gene3D Ribonuclease Inhibitor 42 206 IPR032675 -
Accr12g00320 602 FunFam Nuclear pore complex protein NUP107 41 188 - -
Accr12g00320 602 SUPERFAMILY L domain-like 43 281 - -
Accr12g00320 602 PRINTS Leucine-rich repeat signature 154 167 - -
Accr12g00320 602 PRINTS Leucine-rich repeat signature 109 122 - -
Accr12g00320 602 SUPERFAMILY Protein kinase-like (PK-like) 258 553 IPR011009 -
Accr12g00320 602 Gene3D Phosphorylase Kinase; domain 1 249 356 - -
Accr12g00320 602 FunFam Somatic embryogenesis receptor-like kinase 1 357 573 - -
Accr12g00320 602 SMART LRR_typ_2 130 153 IPR003591 -
Accr12g00320 602 SMART LRR_typ_2 154 178 IPR003591 -
Accr12g00320 602 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Accr12g00320 602 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 25 564 - -
Accr12g00320 602 ProSiteProfiles Protein kinase domain profile. 280 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00320 602 Pfam Leucine Rich Repeat 156 175 IPR001611 GO:0005515
Accr12g00320 602 SMART serkin_6 280 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00320 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Accr12g00320 602 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524
Accr12g00320 602 Pfam Protein kinase domain 281 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00320 602 FunFam Somatic embryogenesis receptor kinase 1 249 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00320 Accr-Chr12 3012697 3016016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00320 25 602 Receptor kinase-like Gene Family AT5G10290 55.684 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Accr12g00320 Pkinase 5.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00320 - - gmx:100800886 916.376