Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00313 ATGGGAGATGGCAATAGTGCCTCCGGCAACAATCGGTCTAACAACAATAACAGTAATAAGCCTGAGTGGCTACAACAGTACGATCTGATAGGGAAAATTGGGGAAGGTACCTATGGTCTTGTGTTCCTCGCAAGGATCAAGTCTGCAACGAATCGTGGAAAATCAATTGCAATCAAGAAATTCAAGCAGTCCAAGGATGGCGACGGAGTCTCTCCCACCGCTATCCGTGAAATTATGTTACTCAGGGAGATAACGCACGAAAATGTCGTGAAGCTTGTAAATGTTCACATCAATCATGCGGATATGTCTCTGTACCTAGCTTTTGATTATGCTGAACACGACCTTTATGAAATCATTCGACATCACAGGGACAAAGTCAGCAATCCTATTAATCAATATACTGTTAAATCATTACTTTGGCAGTTGCTCAACGGACTAAACTATCTGCATAGTAATTGGATAATTCATCGGGACCTTAAGCCATCGAATATATTGGTTATGGGTGAAGGAGAGGAACACGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAGGCCCCTTTAAAGCCCTTATCTGAAAATGGAGTTGTTGTTACCATATGGTATCGTGCACCCGAGTTGCTTCTTGGGGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTGTTAACACTAAAGCCACTGTTTCAAGGAGCAGAAGTCAAAGCCACACCTAATCCATTTCAGCTTGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACTTTAGAAAAGTGGCCTACCCTAGCATATCTTCCCCATTGGCAATCAGATCTTCAGCATATTCAAGGGCACAAATATGACAACACTAGCCTTTGTAATGTTGTCCACCTACCTCCAAAAAGTCCTGCTTATGATCTCCTATCAAAGATGCTTGAATATGATCCTCGAAAGCGGATAACGGCAGCACAAGCTTTGGAACATGAGTATTTCAAAATGGAACCACAGCCTGGGAGGAATGCTCTTGTGCCCTGCCAACCTGGAGAGAAGATTGTGAATTATCCCACTCGTCCAGTTGACTCAACAATAGATTTTGAAGGGACAACCAATTTGCAACCTTCTCAACAGGTTTCATCTGGAAATGCTGTTTCTGGCGGCATGCCAGGTGGTCATTTATCAAATAGATCTGTCCCTCGGCCAATGAATGTTGTGGGCATGCAGAGGATGCCTCCTATGCAACATTATAATCTTGCATCCCAGGCAGGGATGGGCGGTGGAATGAATTCTGGCATCTCTATGCCGCGAGGTGTTGCGCAGGCTCATCAGCAGCAGCAGTTGAGAAGGAAAGACGGTGGAATGATGTTGTCTGGATACCCTCCACAGCAAAAGTCAAGGCGTAACTAA 1422 0.4402 MGDGNSASGNNRSNNNNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSATNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVSNPINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPTLAYLPHWQSDLQHIQGHKYDNTSLCNVVHLPPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKMEPQPGRNALVPCQPGEKIVNYPTRPVDSTIDFEGTTNLQPSQQVSSGNAVSGGMPGGHLSNRSVPRPMNVVGMQRMPPMQHYNLASQAGMGGGMNSGISMPRGVAQAHQQQQLRRKDGGMMLSGYPPQQKSRRN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00313 473 FunFam Putative cyclin-dependent kinase E-1 111 350 - -
Accr12g00313 473 Pfam Protein kinase domain 27 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00313 473 ProSiteProfiles Protein kinase domain profile. 27 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00313 473 PANTHER CELL DIVISION PROTEIN KINASE 25 343 - -
Accr12g00313 473 Gene3D Transferase(Phosphotransferase) domain 1 110 352 - -
Accr12g00313 473 MobiDBLite consensus disorder prediction 375 403 - -
Accr12g00313 473 ProSitePatterns Protein kinases ATP-binding region signature. 33 60 IPR017441 GO:0005524
Accr12g00313 473 MobiDBLite consensus disorder prediction 1 21 - -
Accr12g00313 473 Gene3D Phosphorylase Kinase; domain 1 10 109 - -
Accr12g00313 473 MobiDBLite consensus disorder prediction 441 473 - -
Accr12g00313 473 SUPERFAMILY Protein kinase-like (PK-like) 22 339 IPR011009 -
Accr12g00313 473 FunFam Cyclin-dependent kinase e-1 15 110 - -
Accr12g00313 473 CDD STKc_CDK8_like 26 337 - -
Accr12g00313 473 MobiDBLite consensus disorder prediction 375 389 - -
Accr12g00313 473 SMART serkin_6 27 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00313 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00313 Accr-Chr12 2961771 2967791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00313 1 472 Core Cell Cycle Gene Families AT5G63610 75.630 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Accr12g00313 Pkinase 2.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00313 K02208 - qsa:O6P43_023415 815.839