Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00312 ATGGTAAAGGAAGAAGTCAGCAATGATAGTTACTCAAATGCTGAGACCGGGGATTCAGAATCGCACTTTCAACATAGTCCTGAGAAGGAGACAGGCTGGGCGAGGATGAATTGTCGTGTGTGCCAGTGTGCTGAATCTGATAAGAGGGGAGATGCTGCTCTAGAATTTTTGGGCATTGCTCCAGTTTTAGAATCTGATGCAAGTAATGTTGAAGAAAGGCCAGATTGTGAGGAAATTTCCAAAAATGCATCTCTTAAAAGAAGTGTGGGAGGTAAATCTGGGGTTGTGGAGTTTGTAAGCCCTGATGGAGAGGTTTTCATCTGCAAAACTGATTTAGAAATGGGTCTTTCTCATCGAGACACTCTTATTGAACTTGGCTGCTGTTGCAAAAATGACCTTGCTGCAGTACACTATGCTTGTGCTCTTAAATGGTTTGTCAATCATGGATCTACTGTCTGTGAAATATGTGGAAATGTGGCAAAAAATATCAGAATTGCTGACTTCAATAAAGTTGTCGCTTCTTTGAAAGAATATGAAGCATTGAGGGAAAGAACTGCCATTGGGCAGCCCAGTCTTGCTCAAGTTCATGCAAATACTGGTATAGATCCTGATGCTGTGGCTGCTATCAGGAGGCAACGGCTAAGTGAAATTGCACTATGGTTTTGTCCCCGTAATACCATTAACAACAACAATGCGAACATGGTCTCACCAGTTGTTTCTGAACAACCTTTAAATACTGTAACCGAAGATGCTGCACCTGTTCAAAATCCTGCAACTAAGTGGGCAGTGGAAGTTACTGGGATCCTGCTTGCTACTGGGCTACTTACTGTCACCCTTGCATGGCTCATAGCTCCTCGTGTTGGAAAGAAAACTGCAAGAAATGGTCTTCATATCCTACTTGGAGGTATCTGCGCTTTAACGGTTGTGGTTTTCTTCCGCTTTTTCGTGCTCACCAGAATCAAGTACGGACCTGCACGTTACTGGGCAATTTTGTTCATTTTCTGGTTTCTTGTGTTTGGAATATGGGCTTCACGGACACACAGTGCTCATACGACGTGA 1059 0.4334 MVKEEVSNDSYSNAETGDSESHFQHSPEKETGWARMNCRVCQCAESDKRGDAALEFLGIAPVLESDASNVEERPDCEEISKNASLKRSVGGKSGVVEFVSPDGEVFICKTDLEMGLSHRDTLIELGCCCKNDLAAVHYACALKWFVNHGSTVCEICGNVAKNIRIADFNKVVASLKEYEALRERTAIGQPSLAQVHANTGIDPDAVAAIRRQRLSEIALWFCPRNTINNNNANMVSPVVSEQPLNTVTEDAAPVQNPATKWAVEVTGILLATGLLTVTLAWLIAPRVGKKTARNGLHILLGGICALTVVVFFRFFVLTRIKYGPARYWAILFIFWFLVFGIWASRTHSAHTT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00312 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 160 IPR013083 -
Accr12g00312 352 SMART ringv_2 107 157 IPR011016 GO:0008270
Accr12g00312 352 MobiDBLite consensus disorder prediction 1 20 - -
Accr12g00312 352 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Accr12g00312 352 PANTHER ZINC FINGER, RING-CH-TYPE 10 319 - -
Accr12g00312 352 SUPERFAMILY RING/U-box 121 159 - -
Accr12g00312 352 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00312 Accr-Chr12 2951374 2953636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00312 24 342 C3H Transcription Factor Family AT5G08750 65.964 4.04e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00312 - - qsa:O6P43_023412 509.99