Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00294 ATGGACGATGAGAGCTACAACAATTTGCCAAATGGGGTCATTTCAGAAAGCCCTGAAAGTCCTTCCTTAAAGACTTCAAGCAACAACAACAATAATAACAGCAGCAGCAACAAAGAGCAAGATCGGTTTCTGCCAATAGCCAATGTGGGAAGAATCATGAAGAAAGTGATGCCTCCGAATGGGAAAATCTCAAAGGACGCTAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGCTTCATCACCGGAGAAGCCTCTGATAAATGCCAGAAAGAGAAGAGGAAGACCATCAATGGAGATGATATTATATGGGCCATTTCAATCCTTGGATTTGATGATTATGTGGACCCTTTGAAATGTTACCTTCAGAAGTATAGAGACATTGAAGGAGAGAAGCTTAATCTTCCAAAACAACAACGTTCTGAACAAAGGCTCCACCACCACCACCGAGACCAAACTAATAATAATAGTAATAATTTGCCTATAAGTAGTGTATATTCTTTCACAAACCTAATTTCTCATCAGCCTGCCTATGTTCCTTCTGGCCAGCCATATGCTCTACCTTTCCCCCCAAATTCTATCAAACAGGACCAGATTGATTCGGGGGGACACTGGTAG 621 0.4138 MDDESYNNLPNGVISESPESPSLKTSSNNNNNNSSSNKEQDRFLPIANVGRIMKKVMPPNGKISKDAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDIIWAISILGFDDYVDPLKCYLQKYRDIEGEKLNLPKQQRSEQRLHHHHRDQTNNNSNNLPISSVYSFTNLISHQPAYVPSGQPYALPFPPNSIKQDQIDSGGHW 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00294 206 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Accr12g00294 206 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Accr12g00294 206 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Accr12g00294 206 MobiDBLite consensus disorder prediction 136 161 - -
Accr12g00294 206 MobiDBLite consensus disorder prediction 8 42 - -
Accr12g00294 206 MobiDBLite consensus disorder prediction 1 43 - -
Accr12g00294 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
Accr12g00294 206 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
Accr12g00294 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Accr12g00294 206 FunFam Nuclear transcription factor Y subunit B-3 32 158 - -
Accr12g00294 206 MobiDBLite consensus disorder prediction 136 154 - -
Accr12g00294 206 Gene3D Histone, subunit A 30 167 IPR009072 GO:0046982
Accr12g00294 206 SUPERFAMILY Histone-fold 40 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00294 Accr-Chr12 2763776 2764396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00294 12 197 CCAAT-HAP3 Transcription Factor Family AT2G13570 59.391 2.76e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Accr12g00294 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00294 K08065 - gmx:100778216 293.508