Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00290 ATGGCTGATGGAAGCGTCAACCTTCCTCCTGGGTTTCACTTCTCTCCAACGGATGAAGAACTTGTCCTTCACTTTCTTTACAGCAAAGTTTCTCGTTTACCGTGCCATCCTAACATCATCCCTGATCTTGATATTTCTGTGTCTGATCCTTGGGAATTAAAGGGTAAGGCGTTGTCAAGTGGAAATCAATACTATTTCTTCACCAAAGTGAACGAGAATAGAACCACACAAAGTGGGTATTGGAGAGAAATGGGACTCACTGATTCTATTGTCTCGGCCGCTGACAAGAAAGTAGGAATCAAGAAGTACCTTGTATTCAACATAGGAGAAGCTCCAGAAGGCACTGAAACCAGCTGGGTAATGCAAGAGTATCAGTTTTGCTCATCAGGGTGTAACACAGCATCACATAGAAATACCAGAGGAAGAAGAAAATCGGATCAGAGACAGAGCGAATGGGCTTTATGCCGCGTTTATGAAAGAAACAGAGACCCTCAACAAGAAGTGAAATGCTATGATGATGATGAAGATGACAGCAGAACAGAATTGTCATGGCTGGACGAAGTGTTTTGGTCGTTGGATGATGATCTTGAAGAAATTAACCTGACTTATTATTAG 615 0.4228 MADGSVNLPPGFHFSPTDEELVLHFLYSKVSRLPCHPNIIPDLDISVSDPWELKGKALSSGNQYYFFTKVNENRTTQSGYWREMGLTDSIVSAADKKVGIKKYLVFNIGEAPEGTETSWVMQEYQFCSSGCNTASHRNTRGRRKSDQRQSEWALCRVYERNRDPQQEVKCYDDDEDDSRTELSWLDEVFWSLDDDLEEINLTYY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00290 204 Pfam No apical meristem (NAM) protein 9 125 IPR003441 GO:0003677|GO:0006355
Accr12g00290 204 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Accr12g00290 204 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Accr12g00290 204 PANTHER NAC TRANSCRIPTION FACTOR 56 8 173 - -
Accr12g00290 204 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00290 Accr-Chr12 2689560 2690392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00290 1 161 NAC Transcription Factor Family AT1G61110 39.412 6.88e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr12g00290 NAM 4.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00290 - - gmx:100170711 298.13