Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00287 ATGAACGAAGCTGAAATGACGATTCCTCACTTGTTCAGATGCCCAATAAGTCTAGACTTGTTTGAGGATCCAGTGACTTTGTGCACAGGCCAAACCTATGATAGGTCCAGCATAGAAAGATGGCTTGCTCAAGGTAATCTCACTTGCCCTGTCACAATGCAGAAGCTTCATGATCTATCTATCGTCCCCAATCATACTCTTCGTCATTTGATCGATCAGTGGCTTCAATTGTACCCTCAATTTGGCCACTTTGGTGACTCTAAAACCATAGATTCTCTTGCCTCTCTGAAACGCACCCTTCAATCCCAGGAATCTTCCTTCCAGAACAAACTCCAAGCACTTGAAAAGATCAACCTTTTATCTGATGAGTATTTCTCTTTCAAGAAATCTTGCTTCCTTCAATTGGGTTTCTTGCCTCTTCTTTTGGGACTCGTTTTTGGGGCTCAAATATTCAAAGAGCAGCATCATCACTTGGAGTTCATAGAGCTAGCTCTTTCTTGCATTATAAAGTTGTTACCCCTTGACACTACCTCAGAGCCTCTAAATATGCTCAAACAAGAACCTAACTTTCAATCGTATCTTGTATTATTCGAAAAGGGCAGTCCCAATATTAAAACCAGTCTGTGTAATCTGATAGATTCAGCAGCAACAGCACATTTAGAAGAGGTATTGCTTATGCTTGGAAATTCCCAGAAACTACTCAATGAAATTGTTCATCTTGCGAGCCAAAATAACTGTGAGGCTTCCAGGGCAGCAATTAGAGCCATATCAGCTCTATGTTCCTTGCAATCAAACAGAGAGAATCTGGTAATAGCAGGGGCAATAAATGGAATCATGAGGTACATTTCAGGATGTGAAACAAGAGAGAAGAACCTGGCTCCATTGGGGATGCAGATAATAGAGAAGCTTCTAGTAATAGAGAGAGGCAAAGAAGCATTAGTGAATAGCCCAAATGGGATTCAAACTTTGGTGAAGATGGTGTTCAGAGTGAGTAATCATGAGTGCAGTGAGAATGCTGTGGGGTTATTGATAACGGTGTGCAGAGAAAGTGGACGAGCCAGAGAGGAGGCCATTGAAGAAGGAGTTTTGACTCAGTTGCTTTTGCTTCTGCAGAGTCAATGTAGTGCCAAGACGAAGACGAAGGCAAGAATTCTTCTCAAATTGCTAAGATCCAAATGGGCTGAGAATGTAGCAAAACAGGCCTGA 1206 0.4196 MNEAEMTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIERWLAQGNLTCPVTMQKLHDLSIVPNHTLRHLIDQWLQLYPQFGHFGDSKTIDSLASLKRTLQSQESSFQNKLQALEKINLLSDEYFSFKKSCFLQLGFLPLLLGLVFGAQIFKEQHHHLEFIELALSCIIKLLPLDTTSEPLNMLKQEPNFQSYLVLFEKGSPNIKTSLCNLIDSAATAHLEEVLLMLGNSQKLLNEIVHLASQNNCEASRAAIRAISALCSLQSNRENLVIAGAINGIMRYISGCETREKNLAPLGMQIIEKLLVIERGKEALVNSPNGIQTLVKMVFRVSNHECSENAVGLLITVCRESGRAREEAIEEGVLTQLLLLLQSQCSAKTKTKARILLKLLRSKWAENVAKQA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00287 401 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Accr12g00287 401 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Accr12g00287 401 SUPERFAMILY RING/U-box 3 76 - -
Accr12g00287 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
Accr12g00287 401 SUPERFAMILY ARM repeat 96 389 IPR016024 -
Accr12g00287 401 Gene3D - 90 302 IPR011989 -
Accr12g00287 401 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Accr12g00287 401 CDD RING-Ubox_PUB 9 56 IPR045210 -
Accr12g00287 401 Gene3D - 303 399 IPR011989 -
Accr12g00287 401 PANTHER WDSAM1 PROTEIN 5 395 IPR045185 GO:0061630
Accr12g00287 401 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00287 Accr-Chr12 2675958 2677163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00287 8 396 U-box Gene Family AT1G49780 32.029 1.59e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00287 - - gmx:100819468 507.294