Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00263 ATGCTTGTCCGCACCGCCAACCCACCTGGAACCATCTCTGTTTCAACTTTCAAACCTCAACACCATTACCATTCAATTTTCGGACGTCCCCATCATTCTCTCACATCCTCCATCATTCCCCAGAAAAAAAAAAAAATCCACGCCATCCCTCACCTTCATCATTTTTCTTCGTCCTACAGTTTCTACTACTCTCCACTAATAATGGCCTACTCTTCTCTTTCTTTTATCTTCCTTCTCATCTCCCTCTCCTCCATTATTGCCGGTGCCTACCCCTCTGTCCAAAGCGCCTGTGATGCCACGCGCTTCCCCCAAGAATGCCTTAACGGCCTCCCTCCCAATTCCACCACCTCTCTTCAAATCATCCAATCCGCCATCGCCGTCTCTGCCGACAACCTTAAGACCGCTCAATCCAAGATCAAGTCCATCCTCGACTCCTTGCCCCACGACGGTGGCCATCTTAACCGCACCAGGGCCGCCGAGACCTGCCTCGCCATCCTCCATGACTCCGAGTATCGCATCTCCCTCGTCAACGACGCCCTCCCGGACAGCAACAAGATCAAGGACGCACGCGCGTGGATGAGCGCTGCATTGGCCTACCAATTCGACTGCTGGTCGGGGTTGCAGTACGTATTCGGAAACGACGCCGTCTCCATCAACGACACACTGGTCTTCCTGGACACCCTCACGAGATACTCCAGCAACGCGTTGAGCATGATGGTGTCGTACGACGTGTTTGGCAGCAATACGACGTCGTGGAAGGCGCCCAGGACGGAGCGCGATGGCTTCTGGGAGCCACCGTCGAGGAAAGCGATGGGGTTTGGGTACAAGGGCGGGTTTCCGTTGGATTTGAAGGTGGACGTTACGGTTTGTAAGGAAAAAGAGTGTGATTACCAGGCGGTGCAGGAAGCCGTTAACGCTGCTCCGGATAACAGTGAAGAGAGGTTCATGATATATATAAGAAAAGGGATTTACAATGAAACGGTTAGGATTGCGATAGAGAAGAAGAACGTGATATTCTTAGGCGATGGAATGAGGAAGACCATTATCACTGGATCTGCAAACGTAGGTCAGCCTGGGATGACCACCTACAATTCCGCTACCGTCGGAGTTCTTGGTGATGGATTCATGGCGAAGAATCTGACAATCCAAAACACAGCGGGACCCGATGCTCACCAAGCAGTGGCCTTCAGATCAGACAGCGACCTCTCTGTTCTTGAGAACGTAGAATTCATAGGGAATCAAGACACCCTATACGCTCATTCCCTACGTCAATTCTACAAATCATGTCGCATCCAAGGCAATGTGGACATGATCTTCGGAAACGCGGCGGCGTTTTTCCAAGAGTGCGCCGTCGTACTGAGTGAAAGGCAGAGCAACCCAGAAACAGGGGAGACCAACGCCGTGACGGCGCATGGAAGAACAGACCCAGCACAATCCACAGGCTTTGTATTTTATAACTGCGTGGTGACAGGGACCGAGGATTACATGGCACAGTACAGGAAGAAGCCAGAGGTGCACAGGAACTTCTTGGGGAGGCCATGGAAGGTGTATTCAAGAACCGTGTTCATTCATTCTGTGTTTGAAGCTCTCATCTCGCCGGAGGGTTGGATGGCCTGGGACGGTGATTTGGGTCTGAACACACTTTATTATGGGGAGAGTAACAATACTGGTCCTGGTTCTGATCGGAGTCGGAGGGTGGCCTGGAGTAGTGAGATTCCCAGCCAACATGCGCCGGTGTATTCGGTGGACAACTTCATTCAGGGCAGTGATTGGATTCCATCCTATCAGCCAAGTTGTCGATAG 1803 0.518 MLVRTANPPGTISVSTFKPQHHYHSIFGRPHHSLTSSIIPQKKKKIHAIPHLHHFSSSYSFYYSPLIMAYSSLSFIFLLISLSSIIAGAYPSVQSACDATRFPQECLNGLPPNSTTSLQIIQSAIAVSADNLKTAQSKIKSILDSLPHDGGHLNRTRAAETCLAILHDSEYRISLVNDALPDSNKIKDARAWMSAALAYQFDCWSGLQYVFGNDAVSINDTLVFLDTLTRYSSNALSMMVSYDVFGSNTTSWKAPRTERDGFWEPPSRKAMGFGYKGGFPLDLKVDVTVCKEKECDYQAVQEAVNAAPDNSEERFMIYIRKGIYNETVRIAIEKKNVIFLGDGMRKTIITGSANVGQPGMTTYNSATVGVLGDGFMAKNLTIQNTAGPDAHQAVAFRSDSDLSVLENVEFIGNQDTLYAHSLRQFYKSCRIQGNVDMIFGNAAAFFQECAVVLSERQSNPETGETNAVTAHGRTDPAQSTGFVFYNCVVTGTEDYMAQYRKKPEVHRNFLGRPWKVYSRTVFIHSVFEALISPEGWMAWDGDLGLNTLYYGESNNTGPGSDRSRRVAWSSEIPSQHAPVYSVDNFIQGSDWIPSYQPSCR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00263 600 Gene3D - 281 599 IPR012334 -
Accr12g00263 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 92 238 IPR035513 -
Accr12g00263 600 SMART PMEI_2 88 238 IPR006501 GO:0004857
Accr12g00263 600 Pfam Plant invertase/pectin methylesterase inhibitor 92 238 IPR006501 GO:0004857
Accr12g00263 600 CDD PMEI-like_3 95 239 - -
Accr12g00263 600 FunFam Pectinesterase 4 283 599 - -
Accr12g00263 600 Pfam Pectinesterase 286 588 IPR000070 GO:0030599|GO:0042545
Accr12g00263 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 91 241 IPR035513 -
Accr12g00263 600 FunFam Probable pectinesterase/pectinesterase inhibitor 51 91 241 - -
Accr12g00263 600 PANTHER PECTINESTERASE 78 593 - -
Accr12g00263 600 SUPERFAMILY Pectin lyase-like 284 594 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00263 Accr-Chr12 2422241 2424894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00263 93 591 Carbohydrate Esterase AT5G09760 62.157 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00263 - - qsa:O6P43_023358 674.855