Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00259 ATGCTTAACTCCAATGAAGCAGATATTGAAATATTCTTCGACTCAGCAGATTTTCTGCCACCTCAAAACTCTGTTTTAGACGAAGAGTTAAGCAGTAACAAGTTTGGGTATGAAGTTTGGGTGAATAGTCCTCAAAGTGTGAGGGAACGACGGCAACGTTTTTTCCGGGAAATGGGTTTTGCTGATTTTTCCTCAAACGTTTGCTCTCAAGAGATTAACGTTAACGACTTGGAACTTGAAAGGACAACGGAGAGCGAAGGGGCAATATCAAGTGCCTTCAGTTCTTCTCCTGAAGCAAATGTCTTGCTCGATGAACGTAACGGAGATGTAAACTTTGAAAGGAAGGTGTGTGAGTCATCTTCTTCTTCAGGTGAAGATGACAGACTCAGAGAAGCTGAGGTATCAGAAGAATGTCAATATGGTCCCTTTGATATGAGCAAAAAGAAAATGAAGGGCTTGTGGAAGCTCTTTGTGAAGGGCAGGAAAACAATTGGAGGGAAAGTGAGATCAAAATTAAAAAAAGAGATGAGTAAAAGTCGCAGAATAAATGTAAAGCAGAACAAGAAGAAGTGGATGGAATTGAGTGCCTTGTATTTAGGACAAGAGATTAGAGCTCATGAAGGCATAATCTGGACTATGAAGTTTAGTCCTAATGGCCAGTTTCTAGCAAGTGGTGGTGAAGATGGGGTTGTACGTGTATGGCGTGTTATATCAATGGATACATCAAGCCTTTGCTTCAATGCAGAAGACACTACTGCTAGTAAAGTGAAACAAGAAATCTCTTGTTCTTGGAGAAGCAAGTCAAATATATCATTCATGGCTCTTCCAGACAAGGTTCTCCAAATTGAGGAATCACCCCTGCAAGAATTCTTTGGTCATACCAGCGATGTCTTGGATTTGGCTTGGTCTGATTCCAATATTCTTTTGTCGTCCTCAATGGACAAAACGGTTCGTTTGTGGCAAATTGGTTGTGATCAATGCATGGGAGTCTTCCATCACAATGACTATGTGACATGCATCCAAGTAAACCCAGTAGATAAAAGCTACTTCATCAGTGGGTCCATAGATGGCAAAGTCCGAATATGGGGGTTATGGGAAGAGCGTGTTGTTGATTGGGCAGATGTAAGGGATGTGATTACGGCTGTGAGTTACCAGCCAGATGGGAAGGGGTTTGTAGTTGGATCCATCACTGGTGCTTGTCGTTTTTATATCGCTTCAGGCAAACATTTCCAGCTTGAGGCAGAGATATGGGTTCATGGGAAAAAGAGATCAGCTGGCAACAAGATTACTGGCATTCAGTTTTCACAGAAAAAACACCAGAGAGTTATGATCACATCAGAAGATTCTAAAATTCGTGTGCTTGATGGCTTTGAACTTGTCCAGAAATTTAAAGGCGTTCCGAAATCGGGAAGGCAGATGTGTGGCTCATTTACATCAAAAGAAAATCATATCATTTCTGTTGGAGAGGACTCCCATGTGTACCTTTGGAATTGTATTGACTTGGAAAATTCATCATCCAAACACATAAAATCTGAGCGTTGCTGTGAGTACTTTTCCACTGAAGGGGTTACTGTGGCATTACCCTGGTTGGTAAATAGCACAGAACAAACAAGCTTATGTGGTAACTCAGAAATGCCACATGTCCAAGAGGCTCGTCCTAGTGTTAGAGATTCAGAGCGTTTTTCTCTTGGTAACTGGTTCAACATGGAAGGGACTTGCCGGGGTTCAGTGACGTGGCCGGAAGAGAAACTTCCAAGTTGGAATTTACCATTTGCAGAAGATGAATATGATCTCATAGATGAAAGAAGCGGGTCAGAAACCTGGGGACTAGCTTTTGTGGTGGCTGGTTTGGATGGAACTATCAAGACATTCCATAACTTTGGATTGCCTATTAGGCTTTAG 1902 0.4196 MLNSNEADIEIFFDSADFLPPQNSVLDEELSSNKFGYEVWVNSPQSVRERRQRFFREMGFADFSSNVCSQEINVNDLELERTTESEGAISSAFSSSPEANVLLDERNGDVNFERKVCESSSSSGEDDRLREAEVSEECQYGPFDMSKKKMKGLWKLFVKGRKTIGGKVRSKLKKEMSKSRRINVKQNKKKWMELSALYLGQEIRAHEGIIWTMKFSPNGQFLASGGEDGVVRVWRVISMDTSSLCFNAEDTTASKVKQEISCSWRSKSNISFMALPDKVLQIEESPLQEFFGHTSDVLDLAWSDSNILLSSSMDKTVRLWQIGCDQCMGVFHHNDYVTCIQVNPVDKSYFISGSIDGKVRIWGLWEERVVDWADVRDVITAVSYQPDGKGFVVGSITGACRFYIASGKHFQLEAEIWVHGKKRSAGNKITGIQFSQKKHQRVMITSEDSKIRVLDGFELVQKFKGVPKSGRQMCGSFTSKENHIISVGEDSHVYLWNCIDLENSSSKHIKSERCCEYFSTEGVTVALPWLVNSTEQTSLCGNSEMPHVQEARPSVRDSERFSLGNWFNMEGTCRGSVTWPEEKLPSWNLPFAEDEYDLIDERSGSETWGLAFVVAGLDGTIKTFHNFGLPIRL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00259 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 364 IPR001680 GO:0005515
Accr12g00259 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 322 - -
Accr12g00259 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Accr12g00259 633 SMART WD40_4 456 497 IPR001680 GO:0005515
Accr12g00259 633 SMART WD40_4 283 321 IPR001680 GO:0005515
Accr12g00259 633 SMART WD40_4 196 235 IPR001680 GO:0005515
Accr12g00259 633 SMART WD40_4 366 404 IPR001680 GO:0005515
Accr12g00259 633 SMART WD40_4 324 363 IPR001680 GO:0005515
Accr12g00259 633 SMART WD40_4 409 455 IPR001680 GO:0005515
Accr12g00259 633 PANTHER WD REPEAT DOMAIN 44 168 630 IPR040324 -
Accr12g00259 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 364 - -
Accr12g00259 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 322 IPR001680 GO:0005515
Accr12g00259 633 Pfam WD domain, G-beta repeat 285 320 IPR001680 GO:0005515
Accr12g00259 633 Pfam WD domain, G-beta repeat 202 234 IPR001680 GO:0005515
Accr12g00259 633 Pfam WD domain, G-beta repeat 326 362 IPR001680 GO:0005515
Accr12g00259 633 Gene3D - 186 527 IPR015943 GO:0005515
Accr12g00259 633 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Accr12g00259 633 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Accr12g00259 633 PRINTS G protein beta WD-40 repeat signature 350 364 IPR020472 -
Accr12g00259 633 SUPERFAMILY WD40 repeat-like 198 502 IPR036322 GO:0005515
Accr12g00259 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00259 Accr-Chr12 2365757 2368320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00259 287 397 U-box Gene Family AT2G33340 31.452 3.72e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00259 K20241 - gmx:100801576 772.696