Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00258 ATGGGGAGGGATGATCTATGCGTCACAATTCCTAGCTTCTTCAGGTGCCCTATATCGCTTGACGTCATGAAATCTCCCGTCAGCCTCTGCACCGGCGTCACATACGACCGTTCCAGCATCCAACGCTGGCTCGACGACGGCAACAACACCTGCCCCGCCACCATGCAGGTACTTCAATCCAAGGAATTCGTCCCTAACCTTACCCTCCAAAGGCTTATCCAGATCTGGACTGACTCTGTTCGACACCGAATCGAATCTGCCGATTCCCCAGCTGCTAAATCGGTCCCGGCCCGGGATCAAGTCATTGACGCTATCCGAGATTTGGAGAGCAAAAGCGAGAACCGTTTGTTCTCCCTCGCTGGAATTCTATCATTTGCCGAAGAATCCAAAGAGAACCGGGAATTCCTCGCCAACATGGAGGGATTAGTACCTTTGCTCGTTGGTTTCCTCGACAATGTCGACGGTGGGATCACTCGGAGCGTTGAATTTCTTGAGAAAGTTGTCAAGGCCTTGGAATTGGTACTCAATAAAGCAAAAGATGATGAGACATTGAAGCATTGGATTGTCAAGAGCGAACAAGGTAATTGTTTAGCTTCTCTACTTCTTGTTCTGCAGCGAGGTAGCACTGATTCGAAAATTGCGTCGGTGAAGATTTTGAAATTCGCGGCTGCGGATGTTGAATCGAAAATCCGGATCGCTGGAAAGGAAGGAATAATTCATGAATTGCTTAAAATGACGACATCAGGCAAAGATGCGATGCTAATCGAGAACGGCTTATCCTGCTTGGTGGCAATCTCAACGCCGAAAGGAAACAAGGCGAAATTGATCCATCTTGGTGCTGTGAAACAATTATCGGAATTGCTTTCGCAGTCCAAGTGGAGCGTTTCCATCACCGAGAATGCACTGAAGCTTCTAGAAACGGCATCAACGACTAAGGAAGGAAGGTTGCAGATCTGTGAGGACCCAAATTGCGTGGCGTCGATATTGCAGAAGGTCCTGAAAGTATCTAATGTCGCAACGGAGTACGCAGTGACTATACTTTGGAGCGTGTGTTATCTATTTCGTGATCAGAAGGCGCAAGAAGCGGTGACGAAGGCGAACGGTTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGTTCGCCGGGAGTTCGTCAAATGTGCGCCGATCTGCTCAAGATTTTCCGGGTTAACTCCAAGTCATGCCTCTCTTGCTACCACACCAAGACCACCCACATCATGCCCTTTTGA 1251 0.4852 MGRDDLCVTIPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQVLQSKEFVPNLTLQRLIQIWTDSVRHRIESADSPAAKSVPARDQVIDAIRDLESKSENRLFSLAGILSFAEESKENREFLANMEGLVPLLVGFLDNVDGGITRSVEFLEKVVKALELVLNKAKDDETLKHWIVKSEQGNCLASLLLVLQRGSTDSKIASVKILKFAAADVESKIRIAGKEGIIHELLKMTTSGKDAMLIENGLSCLVAISTPKGNKAKLIHLGAVKQLSELLSQSKWSVSITENALKLLETASTTKEGRLQICEDPNCVASILQKVLKVSNVATEYAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPGVRQMCADLLKIFRVNSKSCLSCYHTKTTHIMPF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00258 416 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Accr12g00258 416 SUPERFAMILY RING/U-box 5 79 - -
Accr12g00258 416 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Accr12g00258 416 Gene3D - 78 405 IPR011989 -
Accr12g00258 416 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Accr12g00258 416 PANTHER WDSAM1 PROTEIN 9 404 IPR045185 GO:0061630
Accr12g00258 416 SUPERFAMILY ARM repeat 168 402 IPR016024 -
Accr12g00258 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 77 IPR013083 -
Accr12g00258 416 CDD RING-Ubox_PUB 11 63 IPR045210 -
Accr12g00258 416 Coils Coil 161 181 - -
Accr12g00258 416 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00258 Accr-Chr12 2352229 2353479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00258 1 416 U-box Gene Family AT5G64660 51.765 1.07e-140 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00258 - - qsa:O6P43_023349 555.829